Salvia splendens (scarlet sage): 121798894
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Entry
121798894 CDS
T07627
Name
(RefSeq) 5'-3' exoribonuclease 4-like isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
121798894
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121798894
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
121798894
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
121798894
NCBI-ProteinID:
XP_042054076
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All DBs
Position
4:complement(16826703..16836256)
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AA seq
994 aa
AA seq
DB search
MGVPAFYRWLADRYPLCIVDVVEEEPGRDEGPVDISRPNPNGIEFDNLYLDMNGIIHPCF
HPEGKPAPATYADVFKYIFDYIDHVVSLVRPRRLLYLAIDGVAPRAKMNQQRSRRFRAAK
DAAAAEAEKDRLRKEFELEGEKLLPKGKTETSDSNVITPGTPFMAVLSIALQYYVQSRLN
RISGWQFLKVILSDANVPGEGEHKIMSYIRLQRNIPGFDPNTRHCLYGLDADLIMLSLAT
HEVHFSILREVITFPGNQEKCFLCGQAGHLAAECRGGANGDGTKYADDTPIHKMKYQFLN
IWVLREYLGYELNIPNPPFEIDFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMF
VYRREFAAMGGYLTDAGEVFLDRVETFVQAVAVHEDQIFKKRTRIQQAYENNEEMKQRAR
GQASQNPNASAGDKVKLGEPGYKERYYSEKFGTSDLQKIDEIRSDVVLKFVEGLCWVCRY
YYQGVCSWQWYYPYHYAPFASDLKGLTDLEITFFPGEPFKPFDQLLGTLPAASSTALPER
YRRLMSDPASPIVDFYPNDFEIDMNGKRFAWQGVAKLPFIDEKKLLAETKKLEETLTEEE
QFRNCVMFDLLYVHPRHPLAAQITIYYRFSGLEKSLWPVDAVVRLIPIYYDGTFYTSVFC
NVDSFLLSGCFSAGMNGFLWLTKRNDLKRNIPSPVYGLEDITNNQALNATYLNPAPHAHT
PKPPAGVNMPVQTVKSFDIKPAPTLWHEDNGGRHQLGKERPQVSRAMSGPILGEAAHRLV
HNTLKIKSDRSNSINFHGNHVANRMRPAGPPGYEMGVSEIQNYPNHHASYRPRVAVPSGY
GRYGYNEQGYYTDPNSLSVQYSPHTLMGSARYGGAPNNVQNNRPIYNAQDRYSYHEQHHD
LRGGMSALTIEGGSSKGRSLAGSSSRSSNSFQMPHTAAQLSQQTGPFPSPLPKWIGKHLP
DGATDMYYTQQTSVAVGQGGHRYQVKNKTGAERR
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgggggttcctgcgttttaccggtggctggcggatcggtaccctctgtgtattgtggat
gtggtggaggaggaaccaggtcgggatgaagggcctgttgacatatcaaggccaaaccct
aatggcattgagttcgataatttgtatttggatatgaatggtataattcacccttgtttc
caccccgaaggcaagcctgcacctgccacttatgcagatgtatttaaatatatctttgat
tacattgaccatgttgtatcattggttcgtccaagaaggctcctttatttggcaattgat
ggtgtggctcccagggctaaaatgaaccagcaaaggtctcgtcgtttcagggctgctaag
gatgctgctgcagctgaagctgaaaaagacaggttgaggaaagagtttgaacttgagggg
gaaaaactattgccaaaaggaaagactgaaacatccgattcaaatgttatcacccctggc
actccatttatggctgtcctctctatagcacttcaatactatgtgcagtcaaggttgaac
cgaatttctggatggcagtttctcaaggttattctttctgacgctaatgttcctggcgag
ggtgagcacaaaattatgtcttatattcgtttacaacgcaacattcctggttttgatcca
aacactaggcactgtctatatggactggatgctgacctgatcatgctctcactagctact
catgaagtccacttttcaatactgagggaggtgattacttttcctgggaaccaggaaaaa
tgctttctctgcggccaagcaggccatctggcagctgaatgtcgtgggggagccaatggt
gatggtacaaagtatgcagacgacactcccattcacaagatgaagtatcagtttctcaac
atctgggttttgcgagaatacttgggatatgagctgaatattccaaatcctccatttgaa
attgatttcgagagactggtggatgatttcgtgttcttatgcttttttgttggcaatgac
tttcttcctcatatgcctacattggaaattagagagggtgccataaatttgctcatgttt
gtatatagaagggaattcgctgcaatgggtggttatcttacagatgctggtgaggttttc
ttggaccgggtcgaaacttttgttcaggcagttgcggtgcatgaagatcaaatttttaaa
aaaagaacccgtatacagcaggcatatgagaataatgaagagatgaagcaaagagcaagg
gggcaggctagtcaaaatcctaatgcttcagctggggacaaggtgaaattgggggaacct
ggatataaagaaaggtattattctgagaaatttggcacgtctgatctgcagaagattgat
gaaatacgatcagatgtggttttgaagtttgtggaagggctgtgttgggtttgccgctat
tattaccaaggtgtctgctcatggcagtggtactatccatatcattatgctccatttgca
tctgatcttaaaggcttaactgatttagagataaccttcttcccaggggagccttttaaa
ccctttgatcaattattgggaaccctgccagctgcgagttctactgctctgcctgaaaga
tacagaaggttgatgtctgatcctgcatcacctattgttgatttctatccaaatgatttt
gaaatcgacatgaatggaaaacgcttcgcttggcagggtgttgccaaattaccattcatt
gatgagaagaaattgcttgctgagaccaagaaacttgaggaaactttaacggaggaagag
caatttcgaaattgtgtcatgttcgatttgttatatgttcatcctcgtcaccctttggca
gctcaaataaccatctactatcgtttttctggccttgaaaaatccctatggcctgttgat
gcagttgtgaggttaatccctatctattatgatggaactttctatacatcagttttctgc
aatgttgattcttttctattgtctggttgtttcagtgctggaatgaatggatttttgtgg
ttaactaaaaggaatgacttgaaaaggaatatcccttctccagtctacggtttggaagac
ataacaaacaatcaagccttaaatgcgacatatctgaatccagcaccgcatgcccacact
ccaaaacctcctgctggtgtaaatatgcctgtacagacagttaaatcgtttgacataaaa
cctgccccaacattatggcatgaagacaatgggggaaggcaccagctaggcaaagaaaga
ccacaggtttctagggcgatgtctggtcctattttgggagaagctgctcatcgcctggtt
cacaatacgttgaagataaagtcagatcgctcaaattcaatcaatttccatgggaatcat
gttgccaacaggatgaggccagctggaccacctgggtatgaaatgggagtctcagagatc
caaaattatccgaaccatcatgcatcttataggccaagagtagccgtgccatctgggtat
ggccgatatggttataacgaacagggatattacaccgacccaaactctttgagtgtccaa
tacagccctcacactctgatgggaagtgctcgatacggtggggccccaaataatgtgcaa
aacaataggccgatttacaacgcgcaagacagatattcatatcacgaacagcatcatgac
cttagaggcggcatgtctgcattaactatagaaggtggttcttccaaaggcaggtcactt
gcaggatcttcttcaagatcgtcgaattcttttcagatgccacataccgctgctcaactc
tcacagcagacaggtccatttccatcaccacttcctaaatggatcggtaaacatcttcca
gacggggctacagacatgtattatacgcaacagacttcagtagcagtagggcaaggggga
caccgttatcaggtaaaaaataagactggcgcagaacgtcgctga
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