KEGG   Streptomyces spongiicola: DDQ41_20450
Entry
DDQ41_20450       CDS       T06937                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sspo  Streptomyces spongiicola
Pathway
sspo03030  DNA replication
sspo03410  Base excision repair
sspo03420  Nucleotide excision repair
sspo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sspo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DDQ41_20450
   03410 Base excision repair
    DDQ41_20450
   03420 Nucleotide excision repair
    DDQ41_20450
   03430 Mismatch repair
    DDQ41_20450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sspo03032]
    DDQ41_20450
   03400 DNA repair and recombination proteins [BR:sspo03400]
    DDQ41_20450
Enzymes [BR:sspo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DDQ41_20450
DNA replication proteins [BR:sspo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DDQ41_20450
DNA repair and recombination proteins [BR:sspo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DDQ41_20450
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DDQ41_20450
   MMR (mismatch excision repair)
    DNA ligase
     DDQ41_20450
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DDQ41_20450
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT HHH_5 Nlig-Ia HHH RNA_lig_T4_1 Zn_ribbon_TFIIB
Other DBs
NCBI-ProteinID: AWK13033
LinkDB
Position
4642296..4644479
AA seq 727 aa
MAVEQQGPVPAEVRDEHARLAEQIEEHRFRYYVKDQPVVSDAEFDRLMRSLEALEGRYPE
LRTPDSPTQRVAVAYETEFTAVEHRERMLSLDNAFDEAELAAWVDRVAKEVGTSAHRFLC
ELKVDGLAVNLTYEKGRLTRAATRGDGRTGEDITPNVRTIADIPVRLRGDRVPDLVEIRG
EVYFPMEAFEELNARRIAAGEQPYANPRNSASGSLRQKDPRVTATLPLHMVVHGIGARDG
LEIARLSEAYELLHEWGLPTARHYRVVDSLEEVREFIAYYGEHRHSVEHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGGEREFVMPAECPECGT
ALRPMKEGDVDLRCPNARSCPAQLRERLFYLVGRKSLDVEAFGYVAAAALTKPLEPAEPP
LADEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPRTGEEKVVTVFANQQGEPKKNTLAML
ENLAAARERPLARILTGLSIRHVGPVAAEELAREFRSIERIEQASQEELAAVEGVGPTIA
ASVKQWFEEDWHREILRKWRAAGVRMEEEGSGEDEGPRPLEGLTVVVTGTLEKHTRDGAK
DALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQLKVPVLDEDGFAVLLEQGPDAARE
AAAPIGE
NT seq 2184 nt   +upstreamnt  +downstreamnt
gtggctgtcgaacagcaggggccggtgccggcggaggtgcgggacgagcatgcccggctg
gccgagcagatcgaggagcaccgcttccggtactacgtgaaggaccagccggtcgtcagc
gacgccgagttcgaccggctgatgcggtccctggaggcgctcgagggcaggtatccggag
cttcggacgcccgactcgccgacccagcgggtcgcggtcgcctacgagacggagttcacg
gcggtcgagcaccgcgagcggatgctgtccctcgacaacgccttcgacgaggcggagctc
gccgcctgggtggaccgggtcgccaaggaggtcggcacgtccgcgcaccgcttcctgtgc
gagctgaaggtcgacggcctggcggtcaacctcacctacgagaagggccggctcacccgg
gccgcgaccaggggcgacggccgcaccggcgaggacatcacccccaacgtccggacgatc
gcggacatcccggtccgcctgcggggcgaccgggtccccgacctggtggagatccggggc
gaggtctacttccccatggaggccttcgaggagctcaacgcccgccggatcgcggccggt
gagcagccctatgccaacccccggaactcggcgtcgggttcgctgcggcagaaggacccc
agggtcaccgcgaccctgccgctgcacatggtggtgcacgggatcggcgcgcgcgacggc
ctggagatcgcccggctctcggaggcgtacgagctcctgcacgagtggggcctgccgacg
gcccggcactacagggtggtggactccctggaggaggtgcgggagttcatcgcgtactac
ggcgagcaccggcactccgtggagcacgagatcgacggggtggtcgtcaagctggacgag
atcccgctccagggccggctgggttcgacgtcgagggcgccgcgctgggcgatcgcctgg
aagtacccgccggaggaggtcaacaccaagctggtggacatccgcgtcggggtgggccgt
accggccgggtgacgccgtacgcgcaggtggagccggtgacggtcgcgggatccgaggtc
gagttcgcgaccctgcacaaccaggacgtggtcaaggccaagggcgtcctgatcggcgac
accgtggtgctgcgcaaggcgggcgacgtcatcccggagatcctcggccccgtggtcgac
ctgcgggacggcggcgagcgggagttcgtcatgccggccgagtgccccgagtgcggtacg
gccctgcggccgatgaaggagggcgacgtcgatctgcgctgccccaacgcccgcagttgc
ccggcccagttgcgggagcggctgttctatctggtgggccgcaagtccctggacgtggag
gcgttcggctatgtggccgcggcggctctgacgaagccgctggagccggccgagccgccg
ctggccgacgagggcgacctgttcgacctgacggtcgagcagctgctgcccatcaaggcg
tatgtgctggaccaggacagcggactgcccaagcgcgaccccaggaccggcgaggagaag
gtcgtcaccgtcttcgccaaccagcagggtgagcccaagaagaacacgctggcgatgctg
gagaacctcgcggccgccagggagcggccactggcccgcatcctcaccggtctctccatc
cgccatgtggggccggtggccgccgaggagctggcccgcgagttccgttcgatcgaacgc
atcgaacaggcgtcccaggaggagctcgcggccgtcgagggcgtcgggccgaccatcgcc
gcctcggtgaagcagtggttcgaggaggactggcaccgcgagatcctccgcaagtggcgg
gccgcaggcgtccggatggaggaggagggctccggcgaggacgagggaccgcgcccgctc
gagggactcacggtcgtcgtcaccggcacgctcgagaagcacaccagggatggcgcgaaa
gacgcgctccagagccgtggagcgaaggtgacgggttccgtctcgaagaagacctcgttc
gtcgttgtgggtgacaaccctggatcgaaatacgacaaagcggtgcaactgaaggtgccc
gtactggacgaggacggcttcgcggtccttctcgagcaagggccggacgcggcccgcgag
gcggccgcaccgatcggggaatag

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