Streptococcus salivarius CCHSS3: SALIVB_1653
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Entry
SALIVB_1653 CDS
T01580
Name
(GenBank) DNA ligase (polydeoxyribonucleotide synthase [NAD+])
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssr
Streptococcus salivarius CCHSS3
Pathway
ssr03030
DNA replication
ssr03410
Base excision repair
ssr03420
Nucleotide excision repair
ssr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SALIVB_1653
03410 Base excision repair
SALIVB_1653
03420 Nucleotide excision repair
SALIVB_1653
03430 Mismatch repair
SALIVB_1653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssr03032
]
SALIVB_1653
03400 DNA repair and recombination proteins [BR:
ssr03400
]
SALIVB_1653
Enzymes [BR:
ssr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SALIVB_1653
DNA replication proteins [BR:
ssr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SALIVB_1653
DNA repair and recombination proteins [BR:
ssr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SALIVB_1653
NER (nucleotide excision repair)
GGR (global genome repair) factors
SALIVB_1653
MMR (mismatch excision repair)
DNA ligase
SALIVB_1653
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SALIVB_1653
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
E1-E2_ATPase
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CCB93914
LinkDB
All DBs
Position
complement(1742288..1744234)
Genome browser
AA seq
648 aa
AA seq
DB search
MKELVAKLNQYAKEYYTEDNPSVSDADYDKLYRELVALEAEHPEYVQADSPTHRVGGLVL
DGFEKYQHEYPLYSLQDAFSREELDAFDQRVKAEFPNADYMAELKIDGLSISLTYVDGVL
QVGATRGDGSIGENITENVKRISDIPLKLDQPLNITVRGECYLPRAEFERINIQRQENGE
AEFANPRNAAAGTLRQLDTKVVAERRLATFLYQEASPTERLTQNDVLNEVAELGFSVNPR
RIVTSSMDEIWDFIQAVGQDRDDLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFP
AEEKEAELLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIGDTVI
VYKAGDIIPAVLRVVESKRTTQEPMEVPTQCPSCGSGLLHFEDEVALRCINPSCPAQIKE
GLIHFASRDAMNIAGMGPSVVEKLFKAELVKDVADIYGLNSQDFLQLEGFKEKSAEKLYA
AIQASKENSAEKLLYGLGIRHVGAKVSKQLLEAFGSIKELASADVEAIAAVDGLGGVIAK
SIQRYFAKEEAQVLMKELETYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSEAKAK
LEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIDVKDEAWLLDL
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagctggttgctaaacttaaccagtatgcaaaagagtattatacggaagataat
ccatcggtgtcagacgccgactatgataagctctatcgagagctagtagctttggaagcc
gagcaccctgaatatgttcaagcagatagtcctacgcatcgtgtgggaggtctggttctt
gatggttttgaaaaatatcaacatgagtatccgctttatagtttgcaggatgctttttca
cgagaagaactggatgcctttgatcagagagtgaaggccgaatttcctaatgctgattat
atggctgaactcaaaattgatggtctctctatctcgctgacctatgtggatggtgttctt
caggtaggtgcgacacgtggtgatggttctatcggtgaaaatatcactgaaaatgtcaag
cgtatctcagatattcctctcaagttggaccaaccgcttaatattaccgttcgtggggag
tgttacctgccacgggctgagtttgaacgcatcaacatccagcgtcaggagaatggtgaa
gccgaatttgccaatccacgtaatgcagcagccggaacccttcgtcagttggataccaag
gtggttgcagagcgtcgtttggcgactttcctttatcaggaagcgagtccaacggagcgt
ctcacacaaaatgatgtcttgaatgaagtggcagaactaggtttctctgttaatccacga
cgtattgtcacatcatcgatggatgaaatttgggactttattcaagctgtcggtcaggat
cgtgatgacttggcttacgatattgatggcgttgttatcaaggtcaatagtttagccatg
caagaagagctaggttttacagttaaggcaccacgttgggccattgcctataaattccct
gctgaggaaaaggaagcagagcttctctcagtggactggcaggtaggtcgtacgggtgta
gtaacaccgactgctaatttgactccggtgcaattagcggggacaacggtaagtcgagcc
acccttcataatgtggattatattgctgaaaaagacattcgtatcggtgataccgttatt
gtctacaaagctggtgatattatccctgcagtacttcgtgtagtggaaagtaagcgtaca
acgcaagaaccaatggaagtaccgacgcaatgtccatcttgtggtagtggcctcttacat
tttgaagatgaagttgccctacgttgtattaatccttcttgtcctgctcagattaaggaa
ggcctcatccattttgcctctcgtgatgccatgaacatcgcaggtatgggaccttcagtg
gttgaaaagctttttaaagctgaattggttaaagatgtggctgatatctatggtttgaac
agtcaagatttcctccaattggaaggtttcaaggaaaagtctgctgaaaaactttatgca
gccattcaagcctcaaaagaaaattctgcagagaaattgctctatggcttgggcattcgt
catgtcggtgccaaagttagtaagcagttgctagaagcttttggcagtataaaagagtta
gcaagtgcagatgtcgaggcaattgctgctgtagatggtttaggaggggttatcgccaaa
tccatccagcgctattttgccaaggaagaagctcaagttcttatgaaagaactggagact
tatggagttaatttgtcctaccttgggcaaaaggtagcagatgatgccatcctatctggt
aagacagttgttttgacaggaaaattggagcatcttaaacgtagtgaagcaaaggcaaaa
ttagaagctctgggtgctaaggtgacaggttctgtctctaagaaaacagatttagtagtt
gctggtagtgatgccggaagtaagttggaaaaagcacaaagcctaggaattgacgtaaaa
gatgaggcttggttgctggatttatag
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