KEGG   Solanum stenotomum: 125841278
Entry
125841278         CDS       T08385                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
sstn  Solanum stenotomum
Pathway
sstn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125841278
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sstn03021]
    125841278
Enzymes [BR:sstn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     125841278
Transcription machinery [BR:sstn03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     125841278
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1 DUF2225
Other DBs
NCBI-GeneID: 125841278
NCBI-ProteinID: XP_049376331
LinkDB
Position
10:complement(54676089..54691745)
AA seq 1446 aa
MEHDRNIEQQVPEGILRGINFSILSETDAAKLSAKVIGAVNEVTDPALGFPNPIFQCTTC
GANDGKKCEGHFGLVNFPYTILNPYFVSEVAQILKKICPGCKSVRRDKVKGSDRTSACKY
CDGVLRGYPPTKFKVSPKDMFGRTAIIAEVNENLLKKVQQTTGVSLASDYWDFIPYDAQQ
EASVNSSNYKRVLSHAQVYSILKDIDPGFLEGLLKRKNSIFLKSCLLTPNSHRVTEFGQH
MIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADRSVINDPNAPATGLKYVKELV
LAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAESLSLRNWERMTDLCDLMILQRG
GILVRRNGVLVRISVMDRLQNGDIIHRPLIDGDVVMINRPPSIHQHSLVALSVRILPINS
VLSINPLVCSPFRGDFDGDCLHGYIPQSIDSRIELSELVALKQQLLDGQNGQNLLSLSHD
SLTAAHLILEPGVFLDRFQMQQLQMFCPRQLGMTAIVKAPPGNLCYWTGKQLFSLLLPSD
LEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHHGGDTLDLLYAAQTVLCEW
LSMRGLSVSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYIQLLMIQYNKDFLSGSLEE
SKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSLLAMLKAGSK
GNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVPECPGSYIPS
AVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYVGYDGTVRNA
YGNQIVQFSYYEAEQIASIKGTGDALESHNHAIGGHPVGSLAACAISEAAYSALDQPVSA
LESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVKGHLERLLLSEV
VSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMRYRAATTKAGHD
LPNLHITCKDCSVAEARKEKSEICITVSVVETSKDPSSLLDTLRDVVIPFLLETVIKGFS
AFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDSCLQIRDLIDWER
SYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTATGEFVPLSA
KGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLAWGKTPSIGTGSS
FDIIYSGKGYEPAEPIDVYTLLQNHVTSGTPKVKVTLDEDSGMDGKSLARRLDRLDDLNK
KSCKSEWSITKLRSFISFNDIKKLSQSLKQMLSKYAIDRELNEADKCIAMMALQFHPRRN
EKIGKGAPQEIKIGYHKEYEDSRCFMLVRSDGSVEDFSYRKCMQHALELIAPQKAKTSRW
LNRASA
NT seq 4341 nt   +upstreamnt  +downstreamnt
atggagcatgatcggaatattgagcagcaagtgccagaaggtattctgaggggcataaat
ttcagtatcttgtcagagactgatgcagccaaattatcagctaaggtaattggagccgtt
aatgaagtaacagatcccgcattggggtttccaaatccaatctttcagtgtacaacatgt
ggtgcaaacgatgggaaaaaatgtgaaggtcattttggattggtaaactttccatataca
attctgaatccgtatttcgtatcggaggttgctcagatcttgaagaaaatatgtccagga
tgtaaatctgtgcgtcgtgataaggtcaagggatctgataggacatctgcctgcaaatac
tgtgatggagttttaagaggttatccgccaacaaagtttaaagtatctcctaaagacatg
tttgggaggactgccattatcgcagaagtgaatgagaatttgttaaagaaggttcagcaa
actacgggagtaagtttggcttctgactattgggatttcatcccatatgatgcacaacaa
gaagcaagtgtaaattcgtcaaattacaaaagagttttatcacatgctcaggtatatagc
attctgaaagatattgatccagggtttcttgaaggacttctcaaaaggaagaattcaatc
ttccttaaaagctgccttttgactccgaatagtcatcgtgtcacagaatttgggcagcac
atgatatttgatgaaagtaataggctttacagaaagttgatcgactttagagggacagca
aatgacttgagcatgtgcgttttagatagaattaaagtttccaagatacgtgcagataga
tcggtaatcaatgatcctaatgcccctgctactggtttgaagtatgtgaaagaattggtt
ctggcaaaacgcactaatcatgctttccgcatggttgtggttggtgatcctaacatagag
ctaggtgaaattggtattccatgtcatgttgctgagaatctccacatggcagaatctcta
agtttacgaaattgggaaaggatgactgatctctgtgatcttatgattcttcagagggga
gggattcttgtccgtagaaatggtgtcttagttcgtattagtgtaatggaccggttgcag
aacggggatattatacatagaccccttattgatggagatgttgtgatgataaatcgacct
ccgtctattcatcaacactcgctagttgctctgtctgttaggattcttccaataaattct
gttctttcaatcaatccccttgtctgttctccattccgtggggattttgatggtgattgc
cttcatggttatattccccaatcaatcgattctaggattgagcttagtgagcttgttgct
ctgaaacagcagttgcttgacggacagaatggtcaaaatcttctttcattaagtcatgat
agcttaactgctgctcatttaattttggaacctggagttttcttggaccgcttccagatg
cagcagctacaaatgttttgtccacgtcaattggggatgactgctatcgtaaaagcacca
ccaggaaacttgtgttattggactggcaaacagttattcagcttgcttttgccatcagac
cttgagtatgtttttccatcaaatggtgtctgtattagtgagggggaaattgtgacatct
tctggtgggtcttcttggctgcgtgatgccagtgataatcttttttatagtctggttaaa
caccatggaggtgatactcttgacctcctttatgctgcacaaacagttctttgtgagtgg
ttgtcaatgagaggccttagtgtttcgttgtccgatctttacatatcttctgattcatat
tcccgcgaaaatatgattgatgaagtctgttctggtttgcaagaggcagaacggttatct
tacatccagcttctgatgatacagtataataaggatttcctttctggaagcttagaagaa
agcaagaactccatgggttttgattttgagtttatgtccatcatgcagcagaaatcagct
tcccttagtcaagcttctgctagtgctttcaagaaagttttccgggatatccagaatttg
gtatataattatgcaagcaatgacaattcattactggctatgttaaaagctgggagtaag
ggaaacctgctaaaactggtccaacacagcatgtgtcttggtttgcagcagtctttggtt
ccagtatcatttagaatgccccgtcaactttcttgtgatgcatggaacaatcataaatca
catcttgttattgagaaaccacataaggttcctgaatgtcctggttcttacatcccatct
gctgtggttaaaagttcatttcttgcgggtttgaatcctctagagtgttttgtgcattca
ttaaccacccgtgatagttcttttagtggacatgctgatgtttctggaactttgaaccgc
aagcttatgtttttcatgcgtgatctgtacgttggatatgatggaacagtgagaaatgct
tatgggaatcaaattgtgcagttctcttactacgaagcagagcaaattgcttctattaag
ggcactggtgatgccctagaaagtcataaccatgcaattggtggtcatcctgttggttca
ttggcagcctgtgccatttcagaagctgcatacagtgctttggatcaacctgtcagtgca
cttgagtcatcacctttactaaacctgaagaaaatattggaatctggagcggggagtcgt
agtggcgagaaaactgcatcaatgtttctttcaaaaagacttggcagatgggctcatggt
tttgaatatggagctttagaggtcaagggtcatctggaaaggcttcttctttcagaagtt
gtttctacagtaatgatatgcttctcccccgaaacacgtaaaagcactcacaattgtccc
tgggtctgtcattttcatatagataaggaaaatgtgaagacgagaaggctgaagctgaga
tcagttttagatgctcttaatatgagatatagagccgcaacaacgaaagctgggcatgat
cttccaaatctgcatataacgtgcaaggattgttcagttgctgaagcacgaaaagagaag
tccgaaatttgcatcactgtttctgtggttgagacctcaaaagatccttcttcacttctg
gatacacttcgtgatgtggtgattccattccttcttgagacggtgataaaaggtttctct
gcatttaaaaaggttgatatcttatggaaagagttgccaagcccatcaaaatcttccagg
ggctctaccggggaactatatttgcaggtcttcatgtcagaaagttgtgacagaatcaaa
ttctggaatgcgcttgtggatagttgcctccagataagggatttgattgattgggaacgc
agttatcctgatgatgtccatgatctgactgtagcctatggaattgatgtagcatgggag
tactttctatgtaaactacattcagctgtctctgaaactggcaagaaaatccttcccgaa
cacttggtacttgcagcagatagtctcacagctacaggagaatttgttcccttgagtgcc
aaagggctgacactgcaaagaaaggctgctggtgttatttcaccatttatgcaagcgtgc
ttttcgaatccaggggactcgtttgttagggctgccaagatgggattaagtgacaatctt
caagggagtcttgaatcattggcatggggaaagactccttccataggaactggttcttca
tttgacattatctactctggaaagggatatgagcctgctgaaccgatagatgtgtatact
ctgctgcaaaaccatgtcacatcgggtacgccaaaggtgaaggtcactcttgatgaagac
agtggaatggatggaaagtctcttgcacgacgtcttgataggcttgatgatctcaataaa
aagagttgtaaaagcgagtggtcaattacaaagctgagaagtttcatttcattcaacgac
ataaaaaagctctctcagtcattgaagcaaatgttgtccaaatatgctatcgatcgcgag
ttgaatgaagcagacaagtgcatagcaatgatggcattacaatttcatcctcgaaggaat
gagaagattggaaaaggagcaccacaggaaattaagattggttaccacaaagagtatgaa
gattcccgctgctttatgttggtgcgttcagatggatcagttgaagacttctcgtatcgc
aagtgtatgcaacatgctctggaactgattgctcctcaaaaggcaaaaacctctagatgg
ttgaatagagcatcagcctaa

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