Solanum stenotomum: 125846242
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Entry
125846242 CDS
T08385
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125846242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125846242
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125846242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_7th
Ig_NUP210_1st
Big_2
Ig_NUP210_5th
Ig_NUP210_16th
Ig_NUP210_2nd
Ig_NUP210_3rd
Ig_NUP210_15th
Motif
Other DBs
NCBI-GeneID:
125846242
NCBI-ProteinID:
XP_049381574
LinkDB
All DBs
Position
12:27490179..27498731
Genome browser
AA seq
1946 aa
AA seq
DB search
MLHFLSLLLLLLLLPLSSPFPATGPHIADVNILLPPKMTHPVEYRLQGSDGCFKWTWDHH
DILAVLPEYNVSNQCSTSARLKSIAPYSGRKETAVYATDVHTGAVIRCKVYIDIFSRIQI
FHSSIKLDLDGLATLRVRAFDTEENVFSSLVGIQFMWDLMPETDGLPHHLNHIPLKDSPL
TDCGGLCGDLDIQTKLENSGVFSDLYVVKGTEIGHEIVSVHLAEPSVKYMEDKIVLTVAE
AISLEPPSPVCVLIGAVVHYSLKVIRGNMPHLVTLPSAFHRWSVSNSSVAQVDRMVGTAK
ALNLGITTVTVEDTRVVGHTQVSSFYVVLPDSLSLYILPLSLSGDHIEGTEPISSVARWY
VVSGREYLIQVRVFSKGTWAQQEVYLTENDDVKLHDDPSEIWSIVPSSNRVGEKGISRIL
KALSYGLGKLTATLTYSTGHEETKEILKVVQEVMVCDQVKFGMEGASGSITLPWAPGVYQ
ELELKVTGGCAMVSGDYKWFSSDMAIVSVSTFGIVQAKRPGKVTIKAVSVFDSLNYDEIA
VEVSLPSSMIVLPNLPVETPVGSYLRAAVTLKTVDGGLFYKCDAFTPSIKWKTGNDAFIV
VDAGETFISEKQESLPIGSEKYVPACAWTYVYAANSGQTMLHATLSKEFQQYDHSTGGSI
VLQATSRIAAFVPLILHPASDGNQFGGYWFNLVQAEADNRLENMEHLYLTPGTSFEVMLR
GGPNRWDQGVEFVESVESLDEHNLRVQDGAIVNQEFTSYGSTYRIKCQDFGIFRLHFKRG
NLIGEGHPLPAVSEVQLSLTCSFPSSIALIADETVNSVEVIQSAAQADRGSGRIRTSPVT
IANERTVRLSAVGISETGIAFGNSSSLPLKWELKDCDDLAFWDDIHNLAMLSTWEKYLVL
TNATGLCVVRATVTGSVDSVSHRHTLKHFPGSEHDLTDAIRLQLVSSLRVYPEFSLLYLN
HDAKLNLSITGGSCFIDAAVNDTQVVDIIQPASGLQCVQLLLAPKSLGTALVTVRDVGLA
PPLSAFSVVQVADMEWIKITSGEELSIMEGCSLSIDFLAGVSDGNTFDPSQYVYMNIRVH
IEDHIIELVNEDDFSCCDDGYVNVPNFRIRATRLGITTLYVSARQHTGHEILSQPIKVEV
YAPPRIDPSDIFLVPGASYMLTVRGGPKTSAYIEFVSMDNEVAKVHTATGLVSATSPGNT
TIVTKMYRNGNIFICQAYGEVKVGVPSSAMLNVQSEQLAVGRQIPIIPSLSEGNLFSFYE
LCRNYKWIINDDEVLSFQAADSLHVGNHGMHMSKEKGNGLTGYVGDNDLGFIQVLHGRSA
GQTNVTVSFSCDFVAYKSFSESRSYTASISLSVVSELPLALGSPITWILPPHYTTSALLP
SASRTFSKGDPSIGKVTYSILGDCRRKAELEEDDPILIDGSRIRTKESGNLACIQAKDRS
NGRVEVASCVKVAEVTQIRFTAEKLLVHTLAIGAEIDVPIKYYDVLGNPFLEAQDVIPFG
VETNYHDVISVEDAVDGTGNVHLKAISYGRALVRVGFANEPKKSDYVVILVGAHLHPQNP
TLHLGSGLNFSIEGLSDQVSGQWFTSNASIVSVDQLSGHAKAIGEGSVQIIFECSNMKLQ
TTVTVSQPEMMSVDAPREILTNVPLPANGYSFLVKLNDAYRHKYKSAKNRAIFLFDCLVD
PPYVGYVKPWVDLDTGNSYCLFFPYSPESLVLATPKSGGIKQDLAVTIKASLIGEQNISG
SASALFVGGFIIPGTEGDSLQLNLTPQFNRSVLTVVGNTDVSIYWHDRERLAVRPIHGED
SQGRSRAQYEIKIRRAEKFKDKLIFTLPATGQIMEVNVNYEPEERRATTANLNLWATAAA
CFILLIVTATVFISYLDQPVRSRPSAPPGTPSVAAPVTPERSSPAGVSEHSPRTPQPFLD
YVRRTIDETPYYRQDFRRRANPQNTY
NT seq
5841 nt
NT seq
+upstream
nt +downstream
nt
atgttgcactttctttccctgcttcttcttcttcttctactaccactgtcttctcctttt
ccggcgactggtcctcacattgccgatgtcaacatactgctgcctcccaaaatgacacac
ccagttgagtacagacttcaaggaagtgatggttgcttcaaatggacatgggatcatcac
gatattttagctgtgctgcctgagtacaatgtgagtaatcaatgctctacaagtgcccgc
ttgaagtcaattgccccttatagtggtcgaaaggagactgctgtctatgcgacagacgtg
cacactggagctgttatccgatgcaaagtttacattgacatcttctctaggatccagata
ttccatagttctatcaaacttgaccttgatggcctggctactctacgtgtccgtgccttt
gatactgaagagaatgttttctcgtctttggtgggcatacaattcatgtgggacctaatg
cctgaaactgatggattgcctcatcacctgaaccatatccctttgaaggactctccattg
actgattgtggtggattatgtggtgacctagatatccaaacaaagcttgaaaatagtggt
gtgttttctgatctttatgttgtaaaggggacagaaattggccatgaaatagtgtctgtt
catttggctgaaccatcagttaaatatatggaagataaaattgtcctaaccgtggcagaa
gctatatcgctggagcctccttcaccggtttgtgtccttattggtgcggttgttcattat
agtcttaaagttatccgcgggaatatgccacatcttgtaaccttgccttctgcttttcac
cgatggtctgtttcaaactcctcagttgctcaggtagataggatggtgggtactgctaag
gctttgaacttgggaataacaacagtaactgttgaagatactagggtggttggtcataca
caagtgtcttctttctatgttgtcctcccagattccttatcgttgtatatattacctcta
tctctttctggtgatcatatagaaggaactgaaccaatatcctctgtggcacgctggtat
gtagtttctggtcgggaatatctcattcaagtaagggttttctcgaaaggaacatgggca
caacaagaagtttaccttacggaaaatgatgacgttaagttgcatgatgacccatcagaa
atttggagtatagttccctcatccaatcgcgtcggagagaaggggatatccagaatccta
aaagctctctcatatggtctgggaaaactgacagcaactcttacatatagcactggtcat
gaagaaacaaaggaaattctcaaggttgttcaagaagttatggtttgtgaccaggtgaag
ttcggcatggagggtgcctccggcagtattactcttccttgggcacctggtgtttatcag
gagttggagctaaaggttactgggggctgtgcaatggtgtctggtgactacaaatggttc
tcttcggacatggctattgtgtcggtatctacttttggaatcgtccaggcaaaaaggcct
ggaaaagttactataaaggcagtctcggtttttgattctctaaattatgatgagatagct
gttgaagtgagtttgccttcttcaatgatagtactgcctaatttgccggtggagactcct
gtaggttcatatcttcgagctgctgtgacattgaaaacagtggatggtggcttattctac
aaatgtgatgcttttaccccgtccatcaagtggaaaactggaaatgacgctttcattgtt
gtggatgctggtgagaccttcatttctgaaaagcaagaaagtcttccaattggttctgag
aaatatgtccctgcatgtgcatggacctatgtctatgctgctaattccggtcagacgatg
ctacatgcaacattgtcaaaagaatttcaacagtatgatcactctaccggcggttctatt
gttctgcaagcaacctcacgtattgcagcattcgtacctctcattttgcaccctgcaagt
gatggaaatcagtttggtggttattggtttaatttggtacaggctgaagctgataatcgc
ttagaaaatatggagcatctatatcttacccctggcacatcttttgaagtgatgcttcgt
ggtggacctaatcgatgggatcagggagttgaatttgttgaatccgtggaaagtttggat
gaacacaatcttagggttcaagatggggctatagttaatcaagaatttaccagctatggg
agcacatacagaatcaagtgtcaagattttggaatctttaggcttcatttcaaacgtggg
aatttaattggagaggggcatcctctgcctgctgtatctgaagtgcaattgtcactcaca
tgtagttttccatcatctatagcattaatagctgatgaaactgttaattctgttgaagtg
atccagtctgcagctcaggctgaccgtggcagtggaaggattcgtacttccccagtcaca
atagcaaatgagcgcacagttcgactatcagctgttggcattagcgagactggaatagct
tttggaaattcatcttctcttcctttgaagtgggagcttaaagattgtgatgatctggca
ttttgggatgatatccacaacttagcaatgctatcgacttgggaaaagtacttggtcttg
acaaatgcaactggactctgtgttgtacgagcaacagttactggatcagttgattctgtt
agccatcgtcacactcttaaacattttccaggctctgaacatgatcttacagatgctata
cgtttgcaacttgtttcatccttaagggtctatccagaatttagcttgttgtatctcaat
catgatgcaaaattgaacctgtcaattactggaggaagttgtttcattgatgctgcagta
aatgatactcaagttgtggatatcattcagcctgcttccggtttacagtgtgtacaacta
ctactggctcctaaaagtttgggaactgcacttgtgactgttcgagatgtggggcttgct
ccacctctttctgctttctctgtggttcaagttgcagatatggaatggattaagattaca
tctggagaagaattgagtattatggaagggtgttcactatccatcgattttcttgctgga
gtaagtgatggaaatacttttgatccttcacagtatgtttacatgaatattcgtgttcac
attgaggatcatataattgaacttgtcaatgaagatgatttttcctgttgtgatgatgga
tatgtgaatgtgcctaacttcagaatacgggcaacacgccttgggattaccacactgtat
gtcagtgctagacagcatactggacatgagatactgagccagccaattaaggtagaagtc
tatgcgccacctagaatcgatcctagtgatattttccttgtaccaggggcttcttacatg
cttactgtgaggggaggcccaaaaactagtgcatacattgaatttgtcagtatggataat
gaggtcgcaaaggtccacacagccacaggactagtttctgcaacatcacctggaaacacc
accatagttaccaagatgtacaggaatggaaatatctttatttgtcaggcatatggtgaa
gttaaagtaggtgttccttcttcagcaatgttaaatgttcaaagcgagcagctagctgtt
ggccgtcaaataccaataattccttccctgtccgaggggaatttattttcattttatgaa
ctttgcagaaattataagtggattataaatgatgatgaggtgttgagtttccaagcagca
gacagcttacacgttggaaatcatggaatgcacatgtccaaggagaaaggcaatggactg
acagggtatgtgggtgacaatgaccttggttttattcaagtattgcatggaagatctgca
gggcagacgaatgttacagtttctttctcctgtgattttgttgcttacaaatctttttca
gagtcaagatcatatactgcatctatttccttgtcagtagtgtctgagcttccacttgct
ctgggatcaccaattacttggattctccctccacattataccacgtctgctcttttgcct
tcagcttctagaactttcagtaaaggggatccaagtataggtaaggttacttattctata
ttaggagactgtagaagaaaggctgaattggaggaagatgatcctatactcattgatggg
agcagaataagaacaaaagagagtggcaatcttgcatgtattcaagcaaaagataggtca
aatggaagagttgaggtggcctcttgtgtgaaggttgctgaagtgactcaaatacgtttc
actgcagaaaagttgctggttcacacattagcaattggtgctgaaattgatgttccaatc
aaatattatgatgtgcttggaaatcctttccttgaggctcaagatgttattccgtttgga
gttgaaactaactaccatgatgtcatctctgtcgaggatgcagttgatggcactggaaat
gtccatctcaaagcaatcagttatggtagagctcttgtgcgagtaggtttcgccaatgaa
ccaaagaaatctgattatgtggtgattcttgttggtgctcatttgcatcctcagaatcca
actcttcacctaggaagtggtcttaacttcagcatagaaggtctaagtgatcaagtatct
ggtcagtggtttactagtaatgcaagcattgtgtctgtggaccagctatctggacatgcc
aaggcaataggggaaggttctgtacaaattatctttgagtgttcgaatatgaaactgcaa
actacagttacggtgtcacagccagagatgatgtctgttgatgctccaagggaaatcctg
acaaatgtgccgcttcctgcaaatggatatagctttcttgtaaaactcaatgatgcttat
cgccacaagtacaaatctgctaaaaacagggcaattttcttgtttgattgcctggttgat
ccaccttatgttggttatgtgaagccgtgggttgatcttgatactggtaattcatattgc
cttttctttccttactctccagaaagtttggtacttgccactccaaagtcaggaggcatt
aaacaggatttagctgttactattaaggcatcactcatcggagagcagaatatctcagga
tctgcatcagcactttttgttggaggtttcatcattccgggaacagaaggagattcattg
cagttaaatctaaccccacaatttaacaggagtgtcctcactgttgtaggaaacacagat
gtgagtatctactggcatgatcgggaacggctagctgtcagacccatacatggagaagat
tctcaaggaagaagccgtgcacagtatgagatcaaaattcgcagagcagaaaagtttaaa
gacaaactgatttttacactcccagcaactggtcagatcatggaagttaatgttaactat
gaacctgaagagagaagagcaacaactgctaaccttaatctatgggctactgcagctgct
tgtttcatcttgcttattgtcacagccactgtattcatttcttacttggatcaacctgtg
agatcccgaccatctgctcctcctggcacgccgagtgtagctgcacctgtaactcctgag
cgaagcagtcctgctggagtaagcgaacattcccctcggacacctcaacctttcttggat
tatgttaggaggacaattgatgaaactccatactacagacaagactttaggaggagggct
aaccctcagaacacttactag
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