Solanum stenotomum: 125856825
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Entry
125856825 CDS
T08385
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
sstn
Solanum stenotomum
Pathway
sstn04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
125856825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125856825
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
125856825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
125856825
NCBI-ProteinID:
XP_049392426
LinkDB
All DBs
Position
2:28585794..28627131
Genome browser
AA seq
972 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIVDMVEEEPKDDVPVDVSKPNPNGMEFDNLYLDMNGIIHPCFH
PEGKPAPATYNDVFNSIFDYIDHLFSLVRPRKLLYMAIDGVAPRAKMNQQRTRRFRAAKD
AAESEAEEKRLREEFEMEAAILVPTEKPETSDSNVITPGTPFMAVLSVALQYYIHSRLNK
NAGWRFTKVILSDANVPGEGEHKIMSYIRWQRNIPGFNPNTRHCLYGLDADLIMLSLATH
EVHFSILREVITPPGQQEKCFACGQVGHLAANCHGTDGKAVNDTPIHKKKYQFLHIWVLR
EYLQYDLEIYNPPFQIDFERVVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMSIYRRD
FTTMGGYLTDAGEVFLDRVEHFIQAAAVYEDQIFQKRARIQQSIENNERVRKEANAQPHP
PAEDKVKLGEPGYKERYYSEKFGVSTAEDIHEVRQDVVQKYVEGLCWVCRYYYQGVCSWQ
WFYPYHYAPFASDLKGLADLEITFFPGEPFKPFDQLMGVLPAASAKALPEKYRMLMMDPS
SPISDFYPTDFELDMNGKRFAWQAVVKLPFIDEKKLLAETKKLEDTLTDTEQLRNSVMFD
LLYVHHHHTLAPYIISYYHHNVMIPSGAQRPWIIDPNLSGGMNGFIWLSERNGLRERIPS
PLNGLEDILNNKILNITFLNPAPHKHIPRPPEGVFMPKKMLRAVDIKPFPVLWHEDHGTR
RHLGKDRGSVPGAIAGPSLGEAAHRLLKNSLNIKPGGTNFGVLDQSYSRNIPGNHVLNRP
RPAGPSGYEGGFYDQMSRRNSSPNHRPRFPGPSGHASGFFEDPSYIPSNFMPRGASGNPR
YAPSPYELQNTRQNFRMQDRHSYQDQYHSMRNEMSVLTIESGARTRPYSTVARMPNSGQL
SNVCPPPPFTQNVGPLPSPPLQWINKPARGATATYSKHQETSKGPAYDKQVKQVYQIKSR
PTQESPSSETQQ
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccagcattttataggtggttggctgatcgatacccactctcgattgtggac
atggtagaggaagagcctaaagatgatgttccggtggatgtttcaaagccaaaccctaat
ggcatggaatttgataacttgtacttggacatgaatggtatcattcatccttgttttcat
cctgaaggaaagcctgcaccagcaacctacaatgacgtattcaactcaatttttgactac
attgaccatcttttctcattagtgcgtccaagaaaactcctctatatggctattgatgga
gtggctcctagagctaagatgaatcagcagagaaccaggcgtttcagagctgctaaagat
gctgctgaatctgaagctgaagaaaaaaggttaagagaagagtttgagatggaagctgct
attttagtgcctacagaaaagcccgagacatctgattcaaatgttattactcctggtact
ccatttatggcagtactatcagtagctcttcaatattatatacactcgaggttgaataaa
aatgctggctggcggtttaccaaggttatcctttctgatgctaatgtgcctggtgagggt
gaacacaaaattatgtcctacatccgctggcaacgtaacattcctggcttcaacccgaat
acccgccattgtctctatggtctagatgcagatcttattatgttgtctctggctactcat
gaagtccatttttcaatattgagggaggtgattactccaccaggtcagcaggaaaagtgt
tttgcctgtggtcaggttggacatcttgcagctaattgtcatggtacagatgggaaggct
gtgaatgacacacctattcacaagaagaaatatcagtttctccatatctgggtgctgcga
gagtatttgcaatatgatctagagatttacaaccctccatttcagatagactttgaaagg
gtggtggatgattttgtttttttgtgtttttttgttggaaacgattttcttccccatatg
ccaacattggagattcgagagggtgccatcaatttgctgatgtccatctatagaagggac
tttacaactatgggtggttatcttacggatgcgggtgaggtttttttggatagagtagaa
cattttattcaggcagcagcagtttatgaagatcaaatcttccaaaagagagcccggata
caacagtcgatagaaaataatgaaagggtgagaaaagaggctaatgctcagccacatcct
ccggcagaggacaaggtgaagctaggagagcctggatacaaggaaaggtattattctgag
aaatttggtgtatcaactgcagaggatatccatgaagtcagacaagatgtagttcagaag
tatgtggaaggattatgttgggtttgccggtattactaccaaggtgtttgctcgtggcaa
tggttttacccgtatcattacgctccatttgcttctgatctcaaaggtctagcagacttg
gaaattacttttttcccaggggaaccatttaagcccttcgatcagctaatgggtgttcta
ccagctgcaagtgcaaaagctcttcctgaaaagtacaggatgctaatgatggatccttca
tcaccaatttctgatttttacccaacagattttgaacttgacatgaatgggaagcgtttt
gcatggcaggctgttgtaaaattgccgttcatcgatgagaaaaagttacttgctgaaaca
aagaagcttgaagacacgttaacggacacggagcaactaaggaacagtgtaatgttcgat
ttgctctatgttcatcatcaccatactttggccccatatatcatttcgtactatcatcac
aatgttatgattccctccggggcccaaaggccatggataattgatccaaatttgagcggt
gggatgaacggattcatttggttatctgagaggaatggcctgagagagaggattccttcc
ccacttaatggattggaagatatcttaaataataagattctaaatattacctttctgaat
ccagcacctcataagcacattccgcggcctccagaaggagtatttatgcccaaaaagatg
ttgagagctgttgatataaaaccttttcctgtattatggcatgaagatcatggaacccgg
cgccatctaggcaaagataggggttctgtacccggggcaatagcagggccttcactggga
gaagcagcacatcggttgcttaagaactcattgaatatcaaacctggtggaactaatttt
ggagtgttggatcaatcatattctcgaaatattccgggcaaccatgttttgaataggcca
aggccagctggaccatctggctatgaaggtggattctatgatcaaatgagtcgtaggaat
tcgtctccgaatcacaggccacgatttcctggaccctctggacatgcaagtggtttcttt
gaggacccttcttatatccctagcaattttatgcctcgtggtgcatctgggaaccccaga
tatgctccatccccttatgagttgcaaaatactaggcaaaatttcaggatgcaagataga
cattcatatcaagatcagtatcatagcatgagaaatgaaatgtcagtgttgacaatcgaa
agtggtgcaagaacaagaccttattcgactgtggcaagaatgccaaattctggacaacta
tctaacgtctgcccaccacctccattcacacaaaatgtgggtcctcttccttcacctcct
ctgcagtggattaataaacctgcaaggggagctacagcaacgtactcaaagcatcaagaa
acttcaaaagggccggcgtacgacaagcaagtcaagcaggtttaccagatcaaaagccgg
ccaactcaagagtccccaagtagcgaaacacaacagtga
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