Solanum stenotomum: 125867055
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Entry
125867055 CDS
T08385
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125867055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125867055
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125867055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_23
AAA_29
AAA_15
Arf
Zeta_toxin
AAA
ORC-CDC6-like
AAA_30
AAA_28
Motif
Other DBs
NCBI-GeneID:
125867055
NCBI-ProteinID:
XP_049403433
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Position
1:complement(9707311..9710724)
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AA seq
329 aa
AA seq
DB search
MAVKEDKKPSVEINNLKFTYPGIDGHPPPGSIPLIDDFNLTLYPGDRCLLVGSNGAGKTT
ILKILGGKHMVEPDMVRVLGRSAFHDTALTASGDLSYLGGEWRREVAFAGFEVPIQMDVS
AEKMIFGVPGTDPQRRDELIKVLGIDLSWRMHRSSDGQRRRVQICMGLLKPFKVLLLDEI
TVDLDVLARADLLKFLIKECEERGATIIYATHIFDGLENWPSHLIYVAHGKLQLAMPMDK
VKQISNLSLMRTVERWLRKERDEERKRRKERKAKGLPEYEKQVEGTRVVGGDPGRAAGRP
LNNGWAGGTLHSTIAGEENFFLSSNRVLR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcggtaaaggaagacaaaaagccatcagtagagatcaacaatctcaaattcacctac
cctggtattgatggacatccgcctcctggatctatccctttaatagatgatttcaacctt
accctttatcctggtgatcgatgccttcttgtcggatctaatggcgcagggaagactaca
attctgaagatattgggaggaaagcatatggtagaaccagacatggtcagagtgcttgga
agatctgcatttcatgacactgctttaacggcttccggagacctcagttatcttggtgga
gagtggaggagagaagttgcatttgctggatttgaggtgcctatccaaatggatgtttct
gctgagaaaatgatttttggggttccaggaactgatccacaaagacgagatgaactaatt
aaggttcttggtatcgatctgtcctggagaatgcacagatcatctgatgggcaaagaaga
agagtgcagatatgtatgggtcttctgaaaccattcaaggtactacttctcgatgagata
acagttgatctggatgttcttgcaagggctgatcttttgaaatttctgatcaaagaatgt
gaagagcgaggcgctacaataatttatgcaacacacatttttgatggtcttgagaactgg
ccttctcatttaatatatgtggctcatgggaagctgcaattagcaatgccaatggacaag
gtgaagcagatcagcaatttatcactaatgaggacagtagagagatggctgaggaaagaa
agggacgaggagaggaaacgaaggaaagagaggaaggcaaagggccttccggaatatgaa
aaacaagttgaaggcactcgagtggtagggggagatccaggtcgtgctgctggtcgtcca
ttaaacaatggttgggctggtggaacactacattctactattgctggcgaagaaaatttt
ttcttaagctcaaaccgtgttctaagataa
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