Solanum stenotomum: 125867083
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Entry
125867083 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125867083
KO
K11086
small nuclear ribonucleoprotein B and B'
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125867083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125867083
03041 Spliceosome [BR:
sstn03041
]
125867083
03032 DNA replication proteins [BR:
sstn03032
]
125867083
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
125867083
Spliceosome [BR:
sstn03041
]
Complex A
U1 snRNP components
Sm proteins
125867083
U2 snRNP components
125867083
Complex B
U1 snRNP components
125867083
U4/U6.U5 tri-snRNP components
125867083
Complex C
U2 snRNP components
125867083
DNA replication proteins [BR:
sstn03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
125867083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
125867083
NCBI-ProteinID:
XP_049403460
LinkDB
All DBs
Position
6:complement(4042335..4045295)
Genome browser
AA seq
272 aa
AA seq
DB search
MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPTKGSKEE
REDRRTLGLLLLRGEEVISMTVEGPPPPDDSRVKATAGGVSAVPGPGLGRAAGRGVPTGP
MVHAQPGLAGPVRGVGGPAPGMMQPQISRPPINYPQQPPPMVRPPGGGPPPPMQMQMQRP
GGPPMPPPPQFRPGGPGPFPPQFGQRPMGPPPPQMMRGPPPPGSQPPRPGMPGGPPHPGM
PPPPGGQIPVFGPPRPGMPPPPNAPHQQNQQQ
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgtcgaagagttctaagatgcttcaatacatcaattatcgtatgcgtgttact
atccaggatggccgtcaattgatcggcaagtttatggcatttgatcgacatatgaatctt
gtactcggcgattgtgaagagtttcgtaagcttcctcctactaaaggttctaaggaagaa
cgtgaagatcgccgtacacttggtcttcttcttctcaggggtgaagaagtgatttccatg
actgttgaaggtcctccacctccggatgattctcgtgttaaagctactgctggtggtgtt
tctgctgttcctggacccgggttgggtcgggcggcgggtcggggtgttccgactggtccg
atggttcatgctcagccgggtcttgctggtcctgttcgtggtgttggtggacctgcaccg
ggaatgatgcagccgcagatttctcgtccgccgattaattacccgcagcagcctcctcct
atggttcgaccacctggtggtgggcctccacctccaatgcaaatgcaaatgcaaagacct
ggtggcccacctatgcctccgccgccacagttcaggcctggtggtcctggaccgtttccg
cctcagtttggtcagaggcccatgggaccaccacctccacagatgatgagaggtcctcca
ccaccagggtcgcagccaccaagacctggaatgcctggtgggccacctcatccggggatg
cctccacctcctggtgggcaaattccagtctttggacctcctcgcccgggaatgccacct
cctccaaatgcacctcaccagcagaatcagcagcagtag
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