Solanum stenotomum: 125870317
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Entry
125870317 CDS
T08385
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125870317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125870317
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125870317
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
NACHT
AAA_28
AAA
AAA_24
AAA_23
Arf
PduV-EutP
AAA_18
AAA_14
G-alpha
AAA_7
AAA_15
AAA_30
SRP54
AAA_22
AAA_5
FtsK_SpoIIIE
AAA_13
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
125870317
NCBI-ProteinID:
XP_049406676
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Position
7:4320695..4324743
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AA seq
286 aa
AA seq
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MEGESSSIQVNGMQFSYDFQSPIYFDFNLNIAPRSRCLLLGANGSGKTTLLKILAGKHMV
GGKDVVRVLNFSAFHDTHLVCSGDLAYLGESWSKNVGAVGEIPLQGDFSAEHMIFGVEGV
DPVRREKLIELLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEVTVDLDVVARMD
LLDFFKEECEQRGATIVYATHIFDGLETWATDLVYIQEGVLKRTEKLPELPELKSSPNLL
SVVENWLRSETPIEKKKPAPSPPKAQKSSPFGSSPFQSSRHMAYFR
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagaatcaagcagtattcaagtcaatggaatgcaattctcatatgattttcaa
agtcccatctatttcgatttcaatctcaacattgcccccagatctcgctgtctccttctt
ggtgcaaatggatcagggaaaacgacccttttgaagatattggcgggaaaacatatggtc
ggtggaaaagatgtagtcagggtgctgaatttttcggcttttcatgatacccaccttgtt
tgtagtggtgatctggcttaccttggagagtcttggagcaaaaatgttggtgctgttgga
gagattccacttcagggagatttttcagctgaacatatgatatttggagttgaaggagtg
gatccagttcgacgagaaaagttgattgagctgctggatattgatctgcagtggcgtatg
cacaaggtatctgatggtcagaggcgtagagttcaaatctgcatgggtctccttcacccc
tataaggttcttttactggatgaggtcaccgttgacttagatgttgttgcgaggatggat
ttattagatttctttaaggaagaatgtgaacagagaggagctacaattgtctatgcaaca
catatatttgatggactggagacatgggcgactgatcttgtttacatccaagaaggagtt
ctgaagaggactgagaaattacccgagcttcctgagttgaagtcctcccctaatttgctt
tcagtagttgagaactggttgcgttctgagaccccgattgagaaaaagaaacctgctccc
tctccaccaaaagctcaaaagtcctctccttttggctcttctccatttcagtcatctaga
catatggcatattttcgctga
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