Solanum stenotomum: 125876334
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Entry
125876334 CDS
T08385
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125876334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125876334
Spliceosome [BR:
sstn03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125876334
Complex C
U5 SnRNP specific factors
125876334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Motif
Other DBs
NCBI-GeneID:
125876334
NCBI-ProteinID:
XP_049413456
LinkDB
All DBs
Position
9:complement(51676301..51682503)
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AA seq
987 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDQESDREEEDDELPDRSDDERVASDGEQPGASNGWLATQDD
IDMDNQVILAEDKKYYPTAEEVYGEEVETLVMDEDEQPLEMPIIKPVKNLKFELGVKDSS
TYVSTQFLLGLMSNPALVRNVALVGHIHHGKTLFMDMLVEQTHHISTFDQNSEKHMRYTD
TRIDEQERRISIKSVPMSLVLEDSNSKSYLCNIMDAPGHVNFSDEMSAALRLADGAVLIV
DAVEGVMVNTERAIRHAILERIPIVLVINKVDRLITELKLPPKDAYFKLKHIVETVNNQI
TAASSTAGNAQVIDPALGNVCFASATAGWSFTLQSFAKLYVKLHGIAFDANKFALRLWGD
FYFDPDTRSFKKKPPASGVERSFVQFVLEPLYKIYSQVIGEHKKSVEATLAELGVTLSNA
AYRLNVRPLLRLACSAVFGTATGFTDMLVHHIPSAKAAAARKVEHIYTGPKDSAIYKAME
NCDSAGPLMVNVTKLYPKPDCSVFDAFGRVYSGEIMTGQTVRVLGEGYSPDDEEDMTVKE
VTKLWVYQARYRIPISKAPPGAWVLIEGVDASIMKTATLCNLEFDEDVYIFRPLQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLERGLAEDIENGVVS
IDWPRKKLGEFFQTKYDWDLLAARSIWAFGPDKQGPNILLDDTLSSEVDKSLLNAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDAKIAPEPLHRGTGQIIPTARRVAYSAFLMATPR
LMEPVYYVEIQTPMDCLSAIYTVLSRRRGHVTADVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSINKFFDEAMMVELAQQDADLHLQMM
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagtttatatgatgaatttgggaactatattggtcctgaaatagagtctgat
caggaaagtgatagggaagaggaagacgatgagcttcccgataggagtgatgatgagaga
gttgcatctgatggtgagcagcctggtgcgtcaaatggatggcttgccactcaagatgat
attgatatggataaccaagttattcttgctgaagacaagaaatactatccaacagctgaa
gaggtttatggtgaagaagttgagacgttggtcatggatgaagatgaacagccacttgaa
atgccaataattaaaccggtgaagaatctcaagtttgaactaggggtgaaggattcgtcc
acttatgtttcgactcagtttctcttaggtctgatgtcgaacccagcattggttagaaat
gttgctctagtcggacacatacatcacgggaagactttgtttatggatatgctggtggaa
caaacacaccatatatctacgtttgatcagaacagtgagaagcatatgaggtatacagac
acaagaatagatgagcaagagaggaggatatcaatcaagtctgttcctatgtcactagtc
ttggaagacagcaattcaaagtcttacctatgtaacattatggatgctcccggccatgtc
aacttctccgatgaaatgtccgctgctttaagacttgcagatggggcagttttgattgtt
gatgcagttgaaggagtgatggtaaatacagaaagggccattaggcatgcgattctagaa
cgtattccgattgttcttgtgatcaacaaggttgacagattgataactgagcttaaattg
ccaccgaaggacgcctacttcaaattaaagcacatagttgaaactgtcaacaatcaaatt
acagctgcctcgtccacagctggaaatgcacaagtaattgatcctgcattagggaatgtc
tgctttgcaagtgcaacagcaggatggtcattcactctgcagtcatttgccaaactgtat
gttaagcttcacggaattgcatttgatgccaacaagtttgctttgcggctttggggggac
ttctactttgatcctgatacaagaagtttcaagaagaaaccgcctgcaagtggggttgaa
agatcttttgttcagtttgttcttgaacctctttacaaaatctatagccaagtgatcgga
gagcacaagaagagtgttgaagcaaccctagcagaacttggggtgacactaagcaatgca
gcttaccgtctaaatgtaaggcctctgctgaggctggcttgcagtgctgtatttggaact
gccactgggtttactgacatgttggttcatcacatcccttctgctaaagctgctgcagct
aggaaagtggaacacatatacacgggtccaaaggattcagcaatttacaaagcaatggag
aattgtgattccgctggcccgttgatggttaatgtgactaagctgtatccgaaaccagat
tgtagcgtttttgatgcttttggtagggtttacagcggggaaataatgacagggcagaca
gtacgtgttctgggtgagggctattcacctgatgatgaagaggatatgactgtaaaagaa
gttacaaagctgtgggtatatcaagctagatacaggatacccataagtaaggctcctcca
ggtgcatgggttctgattgaaggagtggatgcctcaatcatgaaaactgctactctttgt
aatttagaatttgatgaggatgtatacatatttcgccccctccagtttaatactcttccc
gtggtgaaaacagcaactgaacctttgaatcctagcgaattgcccaaaatggtggagggg
cttaggaaaatcagcaagagttatcctcttgcaatcacaaaggttgaagagtccggtgaa
cacacaatattaggtaccggtgaattgtacctagattccataatgaaggaccttagggag
ctttactccgaggtggaagtgaaggtggctgatccagttgtctcattctgtgaaactgtg
gtggagtcgtcttcaatgaaatgttttgctgaaacacctaacaagaaaaataaaatcacc
atgattgctgaaccactggagagaggacttgctgaggatatcgagaacggtgttgtaagc
atagattggcctagaaagaaactaggtgaatttttccagaccaaatatgactgggatctt
cttgctgcacggtctatttgggcatttggacctgataagcaggggcctaacatcttattg
gatgatacactctcaagtgaagtcgacaagagcttgttgaatgctgttaaagattccatt
gttcaggggtttcaatggggagctcgggaaggacccctctgcgatgagcccattagaaat
gttaaattcaagatcgttgatgcgaagattgcaccggagccgttgcatcgtggaacaggt
cagattattccaactgcacgacgtgtagcctactctgctttccttatggcaacacccaga
cttatggaacctgtgtattatgtggagatccaaactcccatggattgtctctctgctata
tacaccgtgttgtctcgtaggcgtggacacgttactgctgatgttcctcaacctggaacc
cctgcctacattgtcaaggcatttttaccggttattgagtcctttggttttgaaacggac
ttgaggtatcacacccaagggcaggcattttgtctttcagtatttgatcattgggctatt
gtccctggggatcctcttgacaagagcattgttctacgaccactggagcctgccccaatc
caacatctggctcgtgagttcatggtgaagacaaggcgtagaaagggaatgagtgaagac
gtgagcatcaacaagttctttgacgaggctatgatggtggagcttgcacagcaggatgca
gatcttcacctgcagatgatgtag
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