Solanum stenotomum: 125877061
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Entry
125877061 CDS
T08385
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125877061
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
125877061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
zf-C3HC4
zf-RING_5
DUF7578
zf-P11
Motif
Other DBs
NCBI-GeneID:
125877061
NCBI-ProteinID:
XP_049414328
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Position
9:complement(7910796..7933290)
Genome browser
AA seq
723 aa
AA seq
DB search
MLRRIDIKRHQREWMQYIRGLVLTWEIVEQEMNEFLLENYSNDLVLDIQNVSLAEIAEPP
SDFILPLLRYQKEWLAWSLKQETIFKGGILADEMGMGKTVQAIALVLAQCELKKATSGSS
ILSSSLGTSQELPTVKGTLVVCPLIGALQWIREIERCTIKGSNKTLLYHGADREKCMYKL
EEYDFVITTYSTIQADYRPKRKKQNSSVGEDVSRRKSVLHSVKWDRIILDEASHTFIDSC
IKFFVFVTSHFQAHCIKSVHSNSTKAVLALESFYKWALTGTPLQNHIGELYSVVRFLQVT
PYVCYFCEDCNCTGLDFSFSDVCPQCFHQPASHFLWWKKYIEEPLWSYDDEGRDAMVWLK
HKILKSLLLRRTKKERAVDLALPTKTVTVRKDSLDDREYDYYKTLCRRSQAQLDIFVQDG
NVINKHGHIFAMITRLRQAADHPYLVMYSRKELASGDKEARDVEQSCDWCHDAVQDLEVT
CCRHVFCRACMNYLAEGVMEAPCPSCTKPLTFDFTGNKDKGDSSSKPTVKGFRSSSILNK
IQLDKFKTSTKIEALREEIKFMVERDGSAKGIVFSQFTSFLDLIQYSLNLSGINCVQLVG
SMSIAARDAAVNKFTEDSDCRILLMSLKAGAVALNLTVASNVFLMDPWWNPAVEQQAQDR
IHRIGQYKPVWIVRFVIEKTIEENIIELQQKKKLLFEGTVGGSSEALGKLTMEDLSNLLH
RHF
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgttgagaaggatagatataaagagacatcaacgtgagtggatgcaatatataagagga
ctagttttgacatgggaaatagtggaacaagaaatgaatgaattccttctggagaattat
tcaaatgatttagtcttggatattcagaatgtctcgcttgctgaaattgccgagccacca
tcagatttcatcttgccactattgaggtaccaaaaggagtggctggcttggtcattaaag
caagaaactatattcaaagggggtattcttgctgatgaaatgggtatggggaagacggtt
caagccatagcacttgttcttgctcaatgcgaattaaagaaagcaactagtggttccagt
atattgtcgtcttcactcggtacttcccaggagctcccaacagtaaaaggaactcttgtt
gtgtgtcctttgattggagcgttgcaatggattcgtgagattgaacgttgcacgattaaa
ggaagcaacaaaactcttctttatcatggcgccgatagggagaaatgtatgtacaaactg
gaggaatatgattttgtcattactacatactccactatccaggctgactataggccaaaa
aggaaaaagcagaacagcagtgttggtgaagatgtgtccaggaggaagtcagttctgcat
tcagtgaagtgggatcgtatcattttggatgaggcaagtcatacattcatagattcatgc
attaagttttttgttttcgtaacttcgcatttccaggctcattgtatcaaatctgtacac
agcaactccacaaaagcggttcttgctttagaatctttttataagtgggccttaactggt
acacccctgcaaaaccacattggagaattgtactcagttgttcgtttcttacaagttacc
ccttatgtttgttacttttgcgaagattgtaattgcactggacttgattttagcttctcc
gatgtgtgcccacagtgcttccaccaacctgcaagccacttcctctggtggaagaaatat
attgaagaacctttatggtcatacgatgatgaaggtagagatgcgatggtgtggttgaag
cacaaaattctgaaaagcctattgctaagacgtaccaaaaaagagagagctgttgatctt
gcacttcccacaaagactgttacagtaagaaaagattctttggatgatagagaatacgac
tactacaagacattgtgccgtagaagccaagcacagctcgatatatttgtccaggatgga
aatgtgattaataagcatggtcacatatttgctatgatcacacgcctacggcaggcagct
gatcatccgtaccttgtgatgtactctagaaaagagttggctagtggtgataaagaggct
agagatgttgaacaatcatgtgactggtgtcatgatgcagtgcaagatctagaagttact
tgttgtaggcacgtgttttgcagggcgtgtatgaattatttagctgaaggtgtaatggaa
gcgccatgcccttcatgtaccaaacccctcacatttgacttcactggaaataaagataag
ggagattctagttctaaacctactgtcaaagggtttaggtcctcaagtatattgaacaaa
attcagcttgataaattcaagacaagcactaaaatagaagctttgagggaagaaattaag
ttcatggttgaaagggacggttctgcaaaaggaatagtttttagccagttcacatcgttt
ttggatctgatacagtattctcttaatctgtcgggcatcaattgtgttcaattagttgga
tccatgtctattgccgcaagagatgctgcagttaacaaattcactgaggattcagattgc
aggatattacttatgagtttaaaagctggagctgttgctctcaatcttacagttgcatca
aatgttttcttaatggatccttggtggaatcctgcggtggagcagcaagcccaagataga
atccatcgaatagggcaatataaacctgtctggattgtgagatttgtgatagagaagaca
attgaagagaacatcatagagttgcaacagaagaagaaattactttttgaagggacagtc
ggtggttcttcagaggccttaggaaaactaacaatggaggacttgtcaaacctgcttcat
cgtcacttttga
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