Solanum stenotomum: 125877229
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Entry
125877229 CDS
T08385
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125877229
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
125877229
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
125877229
NCBI-ProteinID:
XP_049414533
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All DBs
Position
9:complement(7886412..7902301)
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AA seq
697 aa
AA seq
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MLRRIDIKRRQREWMQYIRGLVLTWEIVEQEMNEFLLENYSNDLVMDIQNVLLAEIAEPP
SDFILPLLRYQKEWLAWSLQQETIFKGGILADEMGMGKTVQAIALVLAQRELKKATSGSS
ILSSSLGTSQELPTVKGTLVVCPLIGALQWIREIERCTIKGSNKTVLYHGADREKCMYKL
EEYDFVITTYSTIQADSVGEDVSRRKSVLHSTKWDRIILDEAHCIKSVHSNSTKAVLALE
SFYKWALTGTPQQNHIGELYSVVRFLQVTPYVCYFCEDCNCTGLDFSFSDACPQCSHQPA
SHFLWWKKYIEEPLWSYDDEGRDAMVWLKHKILKSLLLRHTKKERAVDLALPTKTVTVRK
DSLDDREYDYYKTLCRGSQAQLDIFVQDGNVINKHGHIFAMITHLRQAADHPYLVMYSRK
ELASGNKEARDVEQSCDWCHDAVQDLEVTCCRHVFCRACMNYLAEGVMEAPCRSCTKPLT
FDFTGNKDKGDSSSKPTVKGFRSSSVLNKIQLDKFKTSTKIEALKEEISDMFETDGSAKG
IVFSQFTSFLDLIEYSLNLCGINCVQLVGSMSIAARDAVLKRFTEDANCKILLMSLEAGG
VALNLTVASHVFLMDPWWNPAVEQQAQDRVHRIGQYKPVKIVRFVIENTIEERILELQEK
KKLLFEGTIGGSSEALGKLTNEDLMSLLYHHFWLYGV
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgttgagaaggatagatataaagagacgtcaacgtgagtggatgcaatatataagagga
ctagttttgacatgggagatagtggaacaagaaatgaatgaattccttcttgagaattat
tcaaatgatttagtcatggatattcagaatgtcttgcttgcggaaattgccgagccacca
tcagatttcatcttgccactattgaggtaccaaaaggagtggctggcttggtcattacag
caagaaactatattcaaagggggtattcttgctgatgaaatgggtatggggaagacggtt
caagccatagcacttgttcttgctcaacgcgaattaaagaaagcaactagtggttccagt
atattgtcgtcttcactcggtacttcccaggagctcccaacagtaaaaggaactcttgtt
gtgtgtcctttgattggagctttgcaatggattcgtgagattgaacgttgcacgattaaa
ggaagcaacaaaactgttctttatcatggcgccgatagggagaaatgtatgtacaaactg
gaggaatatgattttgtaattactacatactccactatccaggctgacagtgttggtgaa
gatgtgtccaggaggaagtcagttttgcattcaacgaagtgggatcgtatcattttggat
gaggctcattgtatcaaatctgtacacagcaactctacaaaagcggttcttgctttagaa
tctttttataagtgggccttaactggtacaccccagcaaaaccacattggagaattgtac
tcagttgttcgtttcttacaagttaccccttatgtttgttacttttgcgaagattgtaat
tgcactggacttgattttagcttctccgatgcgtgcccacagtgctcccaccaacctgca
agccacttcctctggtggaagaaatatattgaagaacctttatggtcatacgatgatgaa
ggtagagatgcgatggtgtggttgaagcacaaaattctgaaaagcctattgctaagacat
accaaaaaagagagagctgttgatcttgcacttcccacaaagactgttacagtgagaaaa
gattctttggatgatagagaatacgactactacaagacactgtgccgtggaagccaagca
cagctcgatatatttgtccaggatggaaatgtgattaataagcatggtcacatatttgct
atgatcacacacctacggcaggcagctgatcatccgtaccttgtgatgtactctagaaaa
gagttggctagtggcaataaagaggctagagatgttgaacaatcatgtgactggtgtcat
gatgcagtgcaagatctagaagttacttgttgtaggcacgtgttttgcagggcgtgtatg
aattatttagctgaaggtgtaatggaagcgccatgccgttcatgtaccaaacccctcaca
tttgacttcactggaaataaagataagggagattctagttctaaacctactgtcaaaggg
tttaggtcctcaagtgtattgaacaaaattcagcttgataaattcaagacaagcactaaa
atagaagctttgaaggaagaaattagcgacatgtttgaaacggacggttctgcaaaagga
atagtttttagccagttcacatcgtttttggatctgatagagtattctcttaatctgtgt
ggcatcaattgtgttcaattagttggatccatgtctattgccgcaagagatgctgtactt
aaaagattcactgaggatgcaaattgcaagatattgcttatgagcttggaggctggaggt
gttgccctcaatcttacagttgcatcacatgttttcttaatggatccttggtggaatcct
gcagtggagcagcaagcccaagatagagtccatcgaatagggcaatataaaccggtcaag
attgtgagatttgtgattgagaatacaattgaagagagaatcttagagttacaagagaag
aagaaattactttttgaagggacaattggtggttcttcagaggccttaggaaagctaaca
aacgaggacttgatgtccctgctgtatcatcacttttggctgtatggagtttga
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