Solanum stenotomum: 125877295
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Entry
125877295 CDS
T08385
Name
(RefSeq) ATP-dependent helicase rhp16-like
KO
K15083
DNA repair protein RAD16
Organism
sstn
Solanum stenotomum
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125877295
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
125877295
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
DEAD
zf-RING_2
zf-C3HC4_4
zf-RING_5
Prp18
Prok-RING_4
zf-RING_6
zf-rbx1
FAD_binding_2
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
125877295
NCBI-ProteinID:
XP_049414588
LinkDB
All DBs
Position
9:complement(14218547..14224590)
Genome browser
AA seq
772 aa
AA seq
DB search
MNNDSTRKLLHSVRRLVTFCQGRYPTMPLLSNSVKFNSLANDSDLHSLRARELLISLCPD
FSLVSGKMNPSDQRNYHRLKKRTDKRKHDRKRKQKERGNILIWELVEQTMDEFLLKKYSE
DLDLGNQNAESLSETVEPPSNFIVPLLSYQKEWLAWSLNQENSQIRGGILADETGMGKTI
QAIALVLAQRELQKDSLSSSPEQLLPVVKGTLVICPVIAAMQWFREIERCTTRGSNKTFV
YHGAKMEKCMYKLEEYDFVITMYPTIEADYMPKLSKKGGKNSKKRSRNSKPADDDVSRLK
SILHSVKWNRIILDEAHYIQSVDSNATKAVLALESTYKWALTGAHLQIEVLYSLVRFLRA
DPYAYYFCEDCDGKGLDFRFSNPMCPHNCARYFHWWKKYIEIPVKPIYDEEGRDAMVLLN
HRILKNIMLERTKKERVADLALPTKTVRTRKVSLDTDEYKTYKSLFRRSREQFYSVHAGT
LMKNYFHMFATIVRLRQVVDHPYLVACGNKEAGDVEQACDLCQDAVEDPVVTSCSHVFCK
ACLIDFAESTERMACPSCTEPLTFEFTVNNDSNSEPTGKRFSSSSISKKNQLNEFKTSTK
LEALKEEISIMVERDGSAKGVVFSQFTSFLDLIQRSLNLSGVNCVQLVGSMSVTARDAAV
DKFTKDSDCRILLMSLKDGGIALDVKVVSHVFIMDTWWNPAVEQQAQDRIRRIGQHKPVK
IVRFITKNTIEEKILELQEEKKLRFEGTVGGSSKALGKLKGKDLKSLLNCHF
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgaacaatgattcaactaggaagcttctgcattctgttagaagactagtgacattctgc
cagggacgctacccaactatgccattgctatccaattctgtgaagttcaatagccttgca
aatgacagtgacttgcattctctgcgtgcacgagagctcttaatttcattgtgccctgat
ttctctctggtttctgggaaaatgaatccttcagaccaaagaaattatcatcgattgaag
aaaaggacagataagaggaaacatgatcgaaagaggaaacaaaaggaaagaggaaatatt
ttgatatgggagttagtggaacaaacaatggatgaattccttcttaagaaatattcagaa
gatctagacttgggtaatcagaacgcggaatcgctttctgaaactgttgagccaccatca
aatttcatcgtgccattattgagctaccaaaaggagtggttagcttggtcattaaaccaa
gaaaactctcaaatcagagggggtattcttgctgatgaaacgggaatggggaagactatt
caagccattgctctcgtgcttgctcaacgcgaattacaaaaagattccttgtcatcttca
cctgagcaactcctcccagtagtaaaaggaactcttgttatatgtcctgtgattgcagca
atgcaatggtttcgcgagattgaacgttgcaccactagaggaagcaataaaacttttgtt
tatcatggtgccaaaatggagaaatgtatgtacaaactggaggaatatgattttgtcatt
actatgtaccccactatcgaggctgactatatgcccaaactgtcaaagaagggcggcaag
aactcaaaaaagcgcagcaggaactcaaaacctgctgatgatgatgtgtccaggttgaag
tcaattctgcattcggtgaagtggaatcgtataatattggatgaggctcattatatccaa
tctgtagacagcaacgccacaaaagcggttcttgctttagaatctacatataagtgggcc
ttaactggtgcacacctgcaaattgaagtattgtactcattagtccgtttcttaagagct
gatccttatgcttattacttttgcgaagattgtgatggcaaaggacttgattttagattc
tctaatccaatgtgcccccacaattgtgctcgatactttcactggtggaaaaaatatatt
gaaatacctgtaaagccgatatatgatgaggagggtagagatgcgatggtgttgttgaat
cacagaattctgaaaaatataatgctagaacgtaccaaaaaagaaagagttgctgatctt
gcacttccaacaaagactgttagaacgaggaaagtttctttggatactgatgaatataaa
acctacaagtcattgttccgtagaagtcgagaacaattctatagtgtccatgctggaact
ctgatgaaaaactattttcacatgtttgctactatcgtacgcctacggcaggtagttgat
catccttaccttgtagcttgtggcaataaagaggctggagatgttgaacaagcatgtgac
ttatgtcaggatgcagtggaagatccagtagttacatcttgcagccacgtattttgcaag
gcatgtttgatagattttgctgaaagtacggagaggatggcatgcccttcatgtaccgaa
ccccttacatttgagttcactgtgaataatgattctaattctgaacctactggcaaaagg
tttagctcctcaagtatatcgaaaaaaaatcagctaaatgaattcaagacaagcactaaa
ttagaagctttgaaggaagaaattagcatcatggttgaaagggacggttctgcaaaagga
gtagtttttagccagttcacatcgtttttggatctgatacaacgttctcttaatctgtcg
ggcgtcaattgtgttcaattagttggatccatgtctgttactgcaagagatgctgcagtt
gacaaattcactaaggattcagattgcaggatactgcttatgagcttgaaagatggaggc
attgcccttgatgttaaagttgtatcacatgttttcataatggatacttggtggaatcct
gcggtggagcagcaagcccaagatagaatccgtcgaatagggcaacataaaccagtcaag
attgtgagatttataactaagaatacaattgaagagaaaatcttagagttacaagaggag
aagaaattacgttttgaagggacagttggtggttcttcaaaggccttaggaaagctaaaa
gggaaggacttgaaatccctgcttaattgtcacttttga
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