Streptomyces stoeckheimensis: ACE1OC_38220
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Entry
ACE1OC_38220 CDS
T11171
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssto Streptomyces stoeckheimensis
Pathway
ssto03030
DNA replication
ssto03410
Base excision repair
ssto03420
Nucleotide excision repair
ssto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACE1OC_38220 (ligA)
03410 Base excision repair
ACE1OC_38220 (ligA)
03420 Nucleotide excision repair
ACE1OC_38220 (ligA)
03430 Mismatch repair
ACE1OC_38220 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssto03032
]
ACE1OC_38220 (ligA)
03400 DNA repair and recombination proteins [BR:
ssto03400
]
ACE1OC_38220 (ligA)
Enzymes [BR:
ssto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACE1OC_38220 (ligA)
DNA replication proteins [BR:
ssto03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACE1OC_38220 (ligA)
DNA repair and recombination proteins [BR:
ssto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACE1OC_38220 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACE1OC_38220 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACE1OC_38220 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACE1OC_38220 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
HHH_2
BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
XLF74524
LinkDB
All DBs
Position
8431948..8434014
Genome browser
AA seq
688 aa
AA seq
DB search
MTILSADEAPFGLLSRPDYAAALQQLREASRAYYGGESGLLDDAAYDRLRQSVLAWEAEH
PDEVAQDSPTGLVGDGAAPVGDIAHTTRLLSLDNVFDPDGLVAWGASLQRRLGREPAGGF
TVEPKMDGAAVAARYRDGRLERIVTRGDGTHGEDVSHVIGTIEGLPERLPLPATFEVRGE
VLFTQQQFETANEVRTAHGAQVFANPRNGTAGTLRAKDRPYRLAMTFWAYGAVELDGVAL
APSGATHAETLAAVARAGVATTADTPAGLHVVATLAQAQRKVDEIAALRPGLPFGIDGVV
IKANDAAEQAAAGFGSRFPYWAIAFKLPAVERQTVLRDVVWEVGRTGVLAPTAVLDPVDL
DGSTVTRATLHNPADIRRRDLHLGDTVTVYKAGDIIPRVQAAVTSLRPDGAREVPLPTVC
PQCGGEINKDQERWRCAKGTACALPALIEYAAGRDMLDIDGLGKTYVRALIESGDVTDVA
DLFTLTEEQLATASGSAKRGAKLAEQIAAAKSRPLSRIFCSLGVLGTGRSMSRRIAAYFG
TMDAIRQADAERMQEVDGIGGEKAPVIVEQVASLAAVIDKLVAAGVNMREPQQPEATREG
PLAGRTVVVTGKMSGPLAGAGRSEVNALIEKAGGTAGSSVNSKTTDLVCAPSASGKPSSK
AVKATELGVTVLTPEDFAELVADYMADS
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgacgatcctttccgccgacgaggcgccgttcggcctgctcagccgccccgactacgcc
gccgccctgcagcagttgcgcgaggcgtcccgggcctactacgggggcgagagcggcctg
ctcgacgacgcggcgtacgaccgcctgcggcagtccgttctcgcctgggaggcggagcac
ccggacgaggtcgcccaggattccccgaccggcctggtgggggacggggccgcccccgtc
ggcgacatcgcgcacaccacccggctgctcagcctcgacaacgtcttcgacccggacggc
ctggtcgcctggggagcatccctccagcgccgcctgggccgcgagcccgcgggcggcttc
accgtcgagccgaagatggacggcgcggccgtggccgcgcggtaccgcgacgggcgcctg
gagcggatcgtcacccgcggcgacggtacgcacggtgaggacgtcagccacgtcatcggc
accatagagggcctgcccgagcggctgccgctccccgccaccttcgaggtgcgcggcgaa
gtcctcttcacccagcagcagttcgagaccgcgaacgaagtccgcaccgcccacggcgcg
caggtcttcgcgaacccgcgcaacggcaccgccggcaccctgcgggcgaaggaccggccc
taccgactggcgatgacgttctgggcgtacggagcggtcgagctcgacggtgtcgccctc
gcaccctccggagccacgcacgccgagaccctggccgccgtggcccgcgcgggcgtggcg
accacggccgacacgcccgccggcctgcacgtggtcgccaccctcgcccaggcgcagcgg
aaggtcgacgagatcgccgcgctgcgccccggactgccgttcggcatcgacggggtcgtg
atcaaggcgaacgacgcggccgagcaggccgcggccggcttcggcagcaggttcccgtac
tgggcgatcgccttcaagctgccggccgtcgagcggcagaccgtgctcagggacgtggtc
tgggaagtgggccgtaccggcgtgctcgccccgacggccgtcctcgacccggtggacctc
gacggatccacggtcacgcgggccaccctccacaaccccgccgacatccgccgccgcgac
ctccacctcggggacacggtgacggtgtacaaggcgggcgacatcatcccgcgcgtccag
gccgccgtcacgagcctgcgcccggacggcgcgcgcgaggtgccgctgcccacggtctgc
ccgcagtgcggcggagagatcaacaaggaccaggagcgctggcgctgcgcgaagggcacg
gcgtgcgcgctgcccgcgctcatcgagtacgccgccggtcgcgacatgctcgacatcgac
ggcctgggcaagacgtacgtcagggccctgatcgagtcgggtgacgtgaccgacgtcgcc
gacctgttcaccctcacagaggagcagctcgccaccgcctccgggagcgcaaaacggggg
gcgaagctggccgaacagatcgcggccgccaagtccaggccgctcagccgcatcttctgc
tcgttgggcgttctcggcaccgggcgcagcatgtcccgtcgcatcgccgcgtacttcggc
accatggacgccatccggcaggccgacgccgaacggatgcaggaggtcgacggcatcggc
ggggagaaggccccggtcatcgtcgaacaggtcgcctccctggccgcggtcatcgacaag
ctggtggcggccggggtcaacatgcgggagccgcagcagccggaagccacacgggagggc
ccgctggccggccggaccgtcgtggtcaccggcaagatgagcggcccgctggcgggcgcc
ggccgctccgaggtgaacgcgctgatcgagaaggccggcggcacggcgggcagcagcgtc
aactccaagaccaccgacctggtctgcgctccgtccgcgagcgggaagccgagctccaag
gccgtcaaggccacggagctgggcgtcacggtcctcaccccggaggacttcgcggaactc
gtggccgactacatggccgacagctga
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integrated database retrieval system
