Streptomyces subrutilus: CP968_02890
Help
Entry
CP968_02890 CDS
T07087
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssub
Streptomyces subrutilus
Pathway
ssub03030
DNA replication
ssub03410
Base excision repair
ssub03420
Nucleotide excision repair
ssub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP968_02890 (ligA)
03410 Base excision repair
CP968_02890 (ligA)
03420 Nucleotide excision repair
CP968_02890 (ligA)
03430 Mismatch repair
CP968_02890 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssub03032
]
CP968_02890 (ligA)
03400 DNA repair and recombination proteins [BR:
ssub03400
]
CP968_02890 (ligA)
Enzymes [BR:
ssub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP968_02890 (ligA)
DNA replication proteins [BR:
ssub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP968_02890 (ligA)
DNA repair and recombination proteins [BR:
ssub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP968_02890 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP968_02890 (ligA)
MMR (mismatch excision repair)
DNA ligase
CP968_02890 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP968_02890 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
PTCB-BRCT
MSG_insertion
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QEU77371
UniProt:
A0A5P2UHW2
LinkDB
All DBs
Position
656210..658264
Genome browser
AA seq
684 aa
AA seq
DB search
MTTTTAETLATRDEYAGAIAAALRASAAYYGTGGSALDDASFDLLMGLIQAYEERYPEHT
DPASPTGKVAGGAVPAGEVAHTTALLSLSNAFGPEDLLGWEASLVRRLGAPVSGGFVVEP
KLDGASLAARYRRGRLVRLVTRGNGAGGEDVSHAIGTLVGLPPELAVDATFEVRGEVLLT
AEQFARANATRAEHGAGPFSNARNGAAGTLRAKGRPYTVEMSFWAFGAVALDGGAPLPGA
THAEVMAYVAGTGVRTAADTPAGLSVTATVAGAQEHVERIAALRGALPFGIDGVVVKLNG
LAEQEAAGSGSRHPHWATAYKLPAVERRTRLLDVTWSVGRTGVLAPTAVLEPVEVDGSVV
RHATLHNPADIGRRDLRIGDTVTVYKAGDVIPRVEAPVVELRTGEERPVEPPRVCPGCQG
EVDRSQERWRCARPADCGRIAAILYAAGRDRLDIDGLGERYVRALVEAGDVRDVADLFAL
DHARLAAAAGSGKRAAKLLEQIGAARARPLSRVLCALGLVGTGRGMSRRIARHFGTMDAV
RAADAAAMTAVELVGDVKAAGIVAQLAELGGVIDKLAAAGVNLAEPQSAAAPGDGPLTGQ
TVVVTGRMTGALAAYDTRDKVRALIERAGGTSSSAVSGRTTLLVAGERAGGKVAKAEAAG
IGILTEAAFADRIAGVLSRTGESV
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgaccaccgccgaaaccctggccacccgcgacgagtacgccggcgccatcgcc
gccgccctgcgggcctccgccgcctactacggcaccggcggatcggccctggacgacgcc
tcgttcgacctgctcatggggctgatacaggcctacgaggagcggtaccccgagcacacg
gacccggcctcccccaccggcaaggtggccggcggcgccgtgccggccggggaggtcgcg
cacacgacggcgctgctctcgctctccaacgccttcggccccgaggacctcctcggctgg
gaggcctcgctggtgcgccggctcggggcgcccgtgagcggcgggttcgtcgtcgagccc
aagctggacggcgcttcgctggcagcgcggtaccggcgcggcaggctggtccggctcgtc
acccgcggcaacggcgccggcggcgaggacgtgtcgcacgccatcggcaccctcgtgggc
ctgcctccggagctggccgtggacgccaccttcgaggtgcgcggcgaagtcctgctgacg
gccgagcagttcgcccgggcgaacgcgacgcgcgccgaacacggggccggcccgttctcc
aacgcgcgcaacggcgcggcgggcaccctgcgggccaagggccgcccgtacacggtggag
atgtccttctgggcgttcggcgcggtggcgctcgacggcggcgcgcccctgcccggcgcc
acccacgcggaggtgatggcgtacgtggccggcacgggtgtgcgcacggcggccgacacc
ccggccgggctgtcggtgaccgccaccgtcgccggggcgcaggagcacgtggagcggatc
gcggcgctgcgcggcgctctgccgttcgggatcgacggggtcgtggtgaaactgaacggc
ctggccgaacaggaggcggccggctccggctcccgccacccgcactgggcgaccgcgtac
aagctgccggcggtggagcggcggacccggctgctggacgtgacctggtcggtggggcgc
acgggcgtgctcgcgcccaccgccgtgctggagccggtggaggtggacggctccgtggtg
cggcacgcgacgctgcacaacccggcggacatcgggcgccgcgacctgcgcatcggcgac
acggtgaccgtctacaaggcgggggacgtcatcccgcgcgtcgaggcccccgtggtcgag
ctgcgcaccggcgaggagcggccggtcgagccgccgcgggtgtgcccgggatgccagggg
gaggtggaccgctcccaggagcggtggcgctgcgcccggcccgccgactgcggccgcatc
gcggcgatcctgtacgcggccggacgcgaccggctcgacatcgacgggctgggcgagcgg
tacgtacgggcgctggtggaggcgggggacgtccgggacgtggcggacctgttcgcgctg
gaccacgcgcgactggccgcggcggccgggagcgggaagcgggccgcgaagctgctggag
cagatcggggccgcgagggccaggccgctgtcgcgggtgctgtgcgcgctcgggctcgtg
ggcacggggcgggggatgtcccggcggatcgcgcggcacttcgggacgatggacgcagtc
cgggccgccgacgcggcggccatgacggcggtggaactggtcggtgacgtcaaggccgcc
gggatcgtcgcccagctcgcggagctcggaggggtgatcgacaagctcgcggcggccggg
gtcaacctcgcggaaccgcagtccgccgccgcgccgggcgacggcccgctcaccggccag
accgtggtggtcacgggccggatgacgggtgcgctggccgcctacgacacccgggacaag
gtccgcgcactgatcgagcgggccggcggcacgtcgtcgagcgccgtctcgggccggacc
acgctgctcgtggcgggcgagagggcgggcggcaaggtcgccaaggccgaggcggcgggc
atcggcatcctcaccgaggcggccttcgccgaccgcatcgcgggcgtcctgagccggacc
ggggagagcgtttag
DBGET
integrated database retrieval system
