Serratia surfactantfaciens: ATE40_014425
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Entry
ATE40_014425 CDS
T06779
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssur
Serratia surfactantfaciens
Pathway
ssur03030
DNA replication
ssur03410
Base excision repair
ssur03420
Nucleotide excision repair
ssur03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATE40_014425 (ligA)
03410 Base excision repair
ATE40_014425 (ligA)
03420 Nucleotide excision repair
ATE40_014425 (ligA)
03430 Mismatch repair
ATE40_014425 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssur03032
]
ATE40_014425 (ligA)
03400 DNA repair and recombination proteins [BR:
ssur03400
]
ATE40_014425 (ligA)
Enzymes [BR:
ssur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ATE40_014425 (ligA)
DNA replication proteins [BR:
ssur03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATE40_014425 (ligA)
DNA repair and recombination proteins [BR:
ssur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ATE40_014425 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATE40_014425 (ligA)
MMR (mismatch excision repair)
DNA ligase
ATE40_014425 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATE40_014425 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
AOF00387
LinkDB
All DBs
Position
complement(3065568..3067589)
Genome browser
AA seq
673 aa
AA seq
DB search
MESIIQQINQLRATLRHHEYQYHVLDAPEVPDAEYDRLMRELRELESAHPEWVTADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNVFDEESFLAFYKRVQDRLKSSDPLTFCCELKLDGLA
VSLLYEDGELVRAATRGDGTTGENITANVRTIRAIPLRLTGDNIPRRVEVRGEVFMPQAG
FEQMNEEARRKDGKVFANPRNAAAGSLRQLDPRIAAKRPLTFFCYGVGLLEGGELPRSHF
ERLMQFKAWGLPVSDRAQRRTGSEEVLAFYRQVEQDRAQLGFDIDGVVIKIDDIDLQETL
GFVARAPRWATAFKFPAQEQITVVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPQVVGVLEDRRPQDAREVVFPLHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIEQLVDKEYVKNPADLFRLSAG
ILTGLDRMGPKSAQNLVNALEKSKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLFA
ADIEALKEVPDVGEVVAKHTRNFLDEALNQQVINELVGAEIGIHWPAPVVVVADEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIA
VIDEAEMIRLLGD
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgataatccaacaaatcaatcaactacgagccacattgcgccatcatgaatac
cagtatcatgtgctggatgcgccggaagtgccggatgcggaatatgaccgcctgatgcgc
gagctgcgcgagctggagagcgcgcatcctgagtgggtcaccgccgattcgccgacccag
cgcgtgggcgcggcaccgctggcggcgttcgaccaggtgcgtcacgaagtgccgatgctg
tcgctggacaacgtgtttgacgaagagagcttcctggcgttttacaagcgcgtgcaagat
aggctcaagagcagcgatccgctgaccttctgctgcgagctgaagctggatggcctggcg
gtcagcctgctgtacgaagacggcgagctggtgcgcgcggcgacgcgcggcgacggcacc
accggtgagaacatcaccgccaacgtgcgtaccatccgcgccatcccgctgcgcctgacc
ggcgacaacatcccgcgccgggtggaagtgcgcggtgaagtgtttatgccgcaggccggt
tttgagcaaatgaacgaagaagcccggcgcaaagacggcaaggtgttcgccaatccgcgc
aacgccgccgccggatcgctgcgtcagctcgatccgcgtattgccgccaaacgtccgttg
accttcttctgctatggcgttggcctgctggaaggcggcgagctgccgcgcagccacttt
gagcgcctgatgcagttcaaagcctggggtctgccggtcagcgatcgcgcccagcgtcgc
accggcagcgaggaagtgctggcgttttatcgccaggtcgagcaggaccgcgcgcagctc
ggtttcgacatcgacggcgtggtgatcaagattgacgacatcgacctgcaggaaacgctg
ggcttcgtggcacgcgcgccgcgctgggcgacggcgttcaaattcccggcgcaggagcag
atcaccgtggtgcgcgaagtggagtttcaggttggccgcaccggcgcgattacgccggtg
gcccgccttgagccggtgctggtggccggggtgaccgtcagcaacgcgaccttgcacaac
gccgatgaaatcgagcgtctggggctgcgcatcggcgatacggtgatcgtgcgccgcgcc
ggcgacgtgatcccgcaggtggtgggggtgctggaagaccgccggccgcaggatgcgcgc
gaagtggtgttcccgctgcattgcccggtgtgcggttccgacgttgagcgcgtggaaggc
gaggccgtggcgcgttgcactggcgggctgatctgcggtgcgcagcgcaaggaggcgttg
aagcacttcgtttcccgtcgcgcgctggacgtagagggcatgggcgacaagatcatcgag
cagctggtggacaaggagtacgtgaagaatccggccgatctgttccgcctgtccgccggc
attctgaccggcctggatcgcatggggccgaaatcggcgcagaacctggtcaacgcgctg
gagaaatccaagcagactaccttcgcccgcttcctgtacgcgctgggcattcgcgaggtc
ggtgaggcgaccgctgccaacctggcggcgcatttcggttcgctggagaagctgttcgcc
gccgatattgaggcgttgaaagaagtgccggacgtcggtgaagtggtggccaaacacacc
cgcaacttcctcgatgaagcgctcaatcagcaggtgatcaacgagctggtgggtgccgag
atcggcattcattggccggcgccggtggtggtggtggcggacgagatagacagcccgttc
gccggcaaaaccgtggtgttaaccggttcgctgagccagctgtcgcgtgacgaagccaaa
gatcgcctgacggcgctgggcgccaaggtcagcggcagcgtatcgaagaaaaccgacctg
gtgatcgccggcgaggcggccggttccaagctggcgaaggcgcaggagctgggtatcgcg
gtgatcgatgaagcggagatgatccgcctgctgggtgactga
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