Streptococcus suis SC070731 (serotype 2): NJAUSS_1094
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Entry
NJAUSS_1094 CDS
T02536
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssus
Streptococcus suis SC070731 (serotype 2)
Pathway
ssus03030
DNA replication
ssus03410
Base excision repair
ssus03420
Nucleotide excision repair
ssus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NJAUSS_1094
03410 Base excision repair
NJAUSS_1094
03420 Nucleotide excision repair
NJAUSS_1094
03430 Mismatch repair
NJAUSS_1094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssus03032
]
NJAUSS_1094
03400 DNA repair and recombination proteins [BR:
ssus03400
]
NJAUSS_1094
Enzymes [BR:
ssus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NJAUSS_1094
DNA replication proteins [BR:
ssus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NJAUSS_1094
DNA repair and recombination proteins [BR:
ssus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NJAUSS_1094
NER (nucleotide excision repair)
GGR (global genome repair) factors
NJAUSS_1094
MMR (mismatch excision repair)
DNA ligase
NJAUSS_1094
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NJAUSS_1094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Bep_C_terminal
A24_N_bact
RNA_lig_T4_1
SLX1_C
Motif
Other DBs
NCBI-ProteinID:
AGG64564
LinkDB
All DBs
Position
complement(1150703..1152631)
Genome browser
AA seq
642 aa
AA seq
DB search
MLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVGGKMLDGFEKY
SHVYPLFSLQDAFSREELEAFDQRVRKEFPQATYICELKIDGLSISLTYEAGNLVVGATR
GDGSVGENITENLKRVADVPLTLPEAVDITVRGECYMPKASFDRVNKQRQEAGEAEFVNP
RNAAAGTLRQLDTGVVAQRGLATFLYQEASPSEATSQSQVLEKLDALGFVTNHEYCLAES
IDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVAYKFPAEEKEA
EILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIGDTVIVYKAGD
IIPAVLKVVDKYRKEQEIMPIPSHCPSCQSDLQHYEDEVALRCINPICPSQLMSKLEHFA
SRDAMNIAGLGSSIVEKLFGAGLVHDVADIYKLTVDDLLTLEGFKEKSANKLYQAIQTSK
SNSAECLLFGLGIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQVIAKSLTTFF
ASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNEAKAKLEALGA
NVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaatcaatacgctaaagagtattatcaattggaccaacctagcgtatcagatgca
gaatatgatacgctttatcgtgaattagtagagctagaaacggctcatccagaactgatt
ttaccagatagtcctacccatcgggtcgggggaaagatgctagacggatttgaaaaatat
agtcatgtttatcctctttttagtttgcaggatgccttttctcgtgaagagttagaagct
tttgaccagcgagttcgcaaggaatttcctcaagcaacgtatatctgtgaattgaagatt
gatggtctgtctatttccctgacctatgaagcgggtaatttagtcgtgggtgctacacgt
ggtgacggtagtgtcggtgaaaatatcacagaaaatctcaaacgagtggctgatgttcct
ttgaccttacccgaagctgtggacatcactgtccgaggtgagtgttatatgccaaaagct
tcctttgaccgtgttaacaaacagcgtcaggaggctggtgaagctgaatttgttaatccg
cgtaatgcagcagcagggaccctccgccagcttgatacgggagtggtggcccagcgtggt
ctcgctactttcctctaccaagaggctagtccatctgaagcgactagtcagtcacaagta
ctggagaaactggatgctctgggatttgtgaccaaccacgaatattgcttggcggagtcg
attgatgacacgtgggattttattgaaaaaatagcagagcgtagagatgatttaccctat
gagatagatggtgttgtcatcaaggtaaatgatttagctatacaagaagaactaggattt
acagttaaagcgccacgatgggcagtagcttacaagtttccagctgaggaaaaagaagca
gaaatcttgtcggttgattggactgttggccgaacaggtgttgtgacaccaacggccaat
cttagtcctgttcaactggcaggaacgactgtcagtcgagcaactttgcataacgtagat
tatatcgccgaaaaagatattcgtattggcgatacggtcattgtttataaggcgggagat
attattccagcagttctgaaagtggtggacaagtatcgaaaagagcaagaaatcatgccc
attcctagtcattgtccgtcttgtcagagcgacctacaacactatgaggacgaagttgcc
ctccgctgtatcaaccctatttgtcctagccagctgatgagtaagttggaacattttgca
agtcgggatgctatgaatatcgcagggctagggtcttcaatcgttgaaaaactctttgga
gcaggcttggtacacgatgttgctgatatttataaattaactgttgatgacctattgacc
ttggaaggtttcaaagaaaaatcagctaacaagctctatcaagccattcaaacttctaag
agtaactcagcagaatgcctcctatttggactaggtattcgccatgtaggtagtaaggca
agtaagattttagtagaaaaatttggtgatttagaaactctagcatttgctgatcaagaa
gcaattgcttcgctagaaggtcttggtcaggttattgctaagtctttgacaacttttttt
gctagtgagggtgcgcaacaacttttagccgaacttaaggaagctaaggtaaacttaacc
tatctcggccaagtagtagatgaaaatgctgcgctatcgggtatgacagttgtactgact
ggtaaattggagcgaatgaaacgaaacgaagccaaagccaaattagaagctttaggggca
aatgtagcgggatctgtttctaaaaaaactaatcttgtggttgccggaacagatgcaggc
agtaaattgaccaaagcacaggagctaggtattgaaataaaagatgaggcttggttagag
agcttgtaa
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