Streptococcus suis TL13 (serotype 16): TL13_0786
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Entry
TL13_0786 CDS
T02672
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssut
Streptococcus suis TL13 (serotype 16)
Pathway
ssut03030
DNA replication
ssut03410
Base excision repair
ssut03420
Nucleotide excision repair
ssut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TL13_0786 (ligA)
03410 Base excision repair
TL13_0786 (ligA)
03420 Nucleotide excision repair
TL13_0786 (ligA)
03430 Mismatch repair
TL13_0786 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssut03032
]
TL13_0786 (ligA)
03400 DNA repair and recombination proteins [BR:
ssut03400
]
TL13_0786 (ligA)
Enzymes [BR:
ssut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TL13_0786 (ligA)
DNA replication proteins [BR:
ssut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TL13_0786 (ligA)
DNA repair and recombination proteins [BR:
ssut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TL13_0786 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TL13_0786 (ligA)
MMR (mismatch excision repair)
DNA ligase
TL13_0786 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TL13_0786 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Bep_C_terminal
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
AGL47716
LinkDB
All DBs
Position
802443..804401
Genome browser
AA seq
652 aa
AA seq
DB search
MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG
GKVLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRKEFPQATYICELKIDGLSISLTYE
AGNLVVGATRGDGSVGENITENLKRVADIPLTLPEAVDITVRGECYMPKASFDRVNKQRQ
EAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSEATSQSQVLEKLDALGFV
TNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLKVVDKYRSEQEVMPIPSHCPSCQSDLQHYEDEVALRCINPICPS
QLMSKLEHFASRDAMNIAGLGSSIVEKLFGAGLVHDVADIYKLSVEDLLTLEGFKEKSAD
KLYQAIQTSKSNSAERLLFGLGIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQ
VIAKSLTTFFASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNE
AKAKLEALGANVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagaatatcagaattagttagcgtgctcaatcaatacgctaaagagtattat
caattggaccaacctagcgtatcagatgcagaatatgatacgctttatcgtgaattagta
gagctagaaacggctcatcctgaactgattttaccagatagtcctacccatcgggtcggg
ggaaaggtgctagacggatttgaaaaatatagtcatgtttatcctctttttagtttgcag
gatgccttttctcgtgaagagttagaagcttttgaccagcgagttcgcaaggaatttcct
caagcaacgtatatctgtgaattgaagattgatggtctatctatttccctgacctatgaa
gcgggtaatttagtcgtgggtgctacacgtggtgacggtagtgtcggtgaaaatatcaca
gaaaatctcaaacgagtggctgatattcccttaaccttacctgaagctgtggacatcact
gtccgaggtgagtgttatatgccaaaagcttcctttgaccgtgttaacaaacagcgtcag
gaggctggtgaagctgaatttgctaatccgcgtaatgcagcagcagggaccctccgccag
cttgatacgggagtggtggcccagcgtggtctcgctaccttcctctaccaagaggctagt
ccatctgaagcgactagccagtcacaagtactggagaaactggatgctctgggatttgtg
accaaccacgaatattgcttggcggagtcgattgatgacacgtgggattttattgaaaaa
atagcagagcgtagagatgatttaccctatgagatagatggtgttgtcatcaaggtaaat
gatttagctatacaagaagaactaggatttacagttaaagcgcctcgatgggcagtagct
tacaagtttccagctgaggaaaaagaagcagaaatcttgtcggttgattggactgttggc
cgaacaggtgttgtgacaccaactgccaaccttagtcctgttcaactggcaggaacgact
gtcagtcgagcaactttgcataacgtagattatatcgccgaaaaagatattcgtattggc
gatacggtcattgtctacaaggcgggggacattattccagcagttctgaaagtggtggac
aagtatcggtctgagcaggaagtaatgcccattcctagtcactgtccgtcttgtcagagc
gacctacaacactatgaagacgaagttgctctccgctgcatcaaccctatttgtcctagc
cagctgatgagtaagttggaacattttgcaagtcgggatgccatgaacatcgcagggcta
gggtcttcaatcgttgaaaaactctttggagcaggcttggtacacgatgttgctgatatt
tataaattatctgttgaggacctattgaccttggaaggtttcaaagaaaaatcagctgac
aagctctatcaagccattcaaacttctaagagcaactcagcagaacgcctcctatttgga
ctaggtattcgccatgtaggtagtaaggcaagtaagattttagtagaaaaatttggggat
ttagaaactttagcatttgctgatcaagaagcaattgcttcgctagaaggccttggtcag
gttattgctaagtctttgacaaccttttttgctagtgagggtgcgcaacaacttttagcc
gaacttaaggaagctaaggtaaacttaacctatctcggacaagtagtagatgaaaatgct
gcgctatcgggtatgacagttgtactgactggtaaattggagcgaatgaaacgaaacgaa
gccaaagccaaattagaagctttaggggcaaatgtagcgggatctgtttctaaaaaaact
aatcttgtggttgccggaacagatgcaggcagtaaattgaccaaagcacaggagctaggt
attgaaataaaagatgaggcttggttagagagcttgtaa
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