Streptococcus suivaginalis: PXH68_05660
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Entry
PXH68_05660 CDS
T10940
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssuv Streptococcus suivaginalis
Pathway
ssuv03030
DNA replication
ssuv03410
Base excision repair
ssuv03420
Nucleotide excision repair
ssuv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssuv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PXH68_05660 (ligA)
03410 Base excision repair
PXH68_05660 (ligA)
03420 Nucleotide excision repair
PXH68_05660 (ligA)
03430 Mismatch repair
PXH68_05660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssuv03032
]
PXH68_05660 (ligA)
03400 DNA repair and recombination proteins [BR:
ssuv03400
]
PXH68_05660 (ligA)
Enzymes [BR:
ssuv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PXH68_05660 (ligA)
DNA replication proteins [BR:
ssuv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PXH68_05660 (ligA)
DNA repair and recombination proteins [BR:
ssuv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PXH68_05660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PXH68_05660 (ligA)
MMR (mismatch excision repair)
DNA ligase
PXH68_05660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PXH68_05660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
5_3_exonuc
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
WNY46380
UniProt:
A0AA96VQ43
LinkDB
All DBs
Position
complement(1214766..1216724)
Genome browser
AA seq
652 aa
AA seq
DB search
MKTRIEELVTILNQYADEYYRTDKPSVSDAEYDKLYRELVELETAHPNLVLPNSPTHRVG
GKILDGFEKYAHVYPLFSLQDAFSREELDAFDQRVRKEFPQATYICELKIDGLSISLTYE
AGNLVVGATRGDGSVGENITENLKRVADIPLTLPKIVDMTVRGECYMPKASFDRVNQQRQ
EAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSEATSQSQVLEKLDSLGFV
TNHDYQLADTIDEVWDFIEKMAERRDDLPYEIDGIVIKVNDLAIQEELGFTVKAPRWAVA
YKFPAEEKEAQILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLKVVDKYRTDQEVMPVPSQCPSCQSDLQHYEDEVALRCINPICPS
QLMSKLEHFASRDAMNIAGLGSSIVEKLFLAGLVKDVADIYKLTVDDLLTLDGFKEKSAD
KLYQAIQASKSNSAERLLFGLGIRHVGSKASKILLEKFGDLEALAQAIQDEIASLEGLGQ
VIAKSLTSFFASSGAQQLLAELKENAVNLTYLGQVADENAALSGLTVVLTGKLERMKRGE
AKAKLEALGANVAGSVSKKTNLVIAGADAGSKLAKAQELGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagaattgaagagctggttaccatcctcaaccagtatgccgacgaatactac
cgaacagacaagccaagtgtgtctgacgctgaatacgacaaactttatcgggaattggtg
gagctggaaacagctcatcccaacttggtattgcctaacagtcccacccaccgcgttggt
ggcaaaattttagacggttttgaaaaatatgcccatgtttatcctctttttagcttgcag
gatgccttttcgcgtgaagaattggatgccttcgatcagcgtgttcgcaaggaatttccg
caggcgacttacatctgtgagctcaagattgatggtctgtccatttccctgacctacgaa
gcgggcaatctggtggttggtgcaacacgtggcgacggcagtgtcggtgagaatatcacg
gaaaatctcaagcgagtggcggacattcccctgaccttgccaaagatagttgatatgact
gtccgtggcgagtgctacatgccaaaagcttcttttgaccgcgtaaatcagcagcggcag
gaggcaggcgaggcagaatttgccaatccacgtaatgcagcggcaggcacccttcgccag
ctggatacaggcgtagttgctcagcgcggtcttgctaccttcctctaccaagaggctagt
ccgtctgaggcgaccagccagtcgcaagtactggaaaagctggatagtctaggctttgtg
accaaccacgactaccagttggcagatacgatcgatgaagtttgggattttattgaaaaa
atggcagagcgacgagacgatttgccttatgaaatcgatggtatcgtcattaaggtcaat
gaccttgctatccaagaagaactcggttttaccgttaaggcacctcgctgggcggtggcc
tacaagtttccagctgaggagaaagaagcgcaaatcctatcagttgattggaccgttggt
cgcacaggtgtcgttacaccaactgccaacctcagtccagttcagctagcaggaacaacc
gttagccgtgctactttgcacaatgtggactacatcgctgaaaaagacatccgcattggc
gatacggtcattgtctacaaggcgggagacattattccagccgttctgaaagtagtggac
aagtatcggactgaccaagaagtcatgcctgtcccaagccaatgtccgtcttgtcagagc
gacttgcagcattacgaagatgaagttgccctccgttgcatcaatcccatttgtcctagc
cagttgatgagcaagttggagcattttgccagccgtgatgctatgaatatcgcaggtctg
ggatcttctattgtagaaaaactcttcctagcgggtctggtcaaggatgtggcggacatc
tacaaactgacagtggacgacctcttaaccctagacggattcaaggaaaaatccgcagat
aagctctaccaagctattcaggcatcaaaaagtaattcagcagaacggctcttgttcggt
ctgggcattcgccatgtcggcagcaaggccagcaagattttactagagaagtttggtgat
ttggaagccctagctcaagccatccaagacgagattgcctctctagaaggattgggccag
gttattgccaagtcactgaccagcttctttgccagctcaggagcccagcaacttttagct
gaacttaaggaaaatgccgtaaacttgacctatctaggacaggtggccgatgaaaatgct
gcactgtctggtctgacagttgtgttgacaggtaagttggaacggatgaagaggggcgaa
gccaaagccaagctagaagccctaggtgccaacgtagcaggctcggtttccaaaaagact
aacttagtcatcgcaggagctgacgcgggaagcaagttggccaaggcacaagaattaggt
attgaaataaaagacgaggcttggttagaaagtctctaa
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integrated database retrieval system
