Streptococcus suis YB51 (serotype 3): YB51_5905
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Entry
YB51_5905 CDS
T03173
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssuy
Streptococcus suis YB51 (serotype 3)
Pathway
ssuy03030
DNA replication
ssuy03410
Base excision repair
ssuy03420
Nucleotide excision repair
ssuy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssuy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YB51_5905
03410 Base excision repair
YB51_5905
03420 Nucleotide excision repair
YB51_5905
03430 Mismatch repair
YB51_5905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssuy03032
]
YB51_5905
03400 DNA repair and recombination proteins [BR:
ssuy03400
]
YB51_5905
Enzymes [BR:
ssuy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YB51_5905
DNA replication proteins [BR:
ssuy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YB51_5905
DNA repair and recombination proteins [BR:
ssuy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YB51_5905
NER (nucleotide excision repair)
GGR (global genome repair) factors
YB51_5905
MMR (mismatch excision repair)
DNA ligase
YB51_5905
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YB51_5905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Bep_C_terminal
A24_N_bact
RNA_lig_T4_1
SLX1_C
Motif
Other DBs
NCBI-ProteinID:
AGW87553
LinkDB
All DBs
Position
complement(1204023..1205981)
Genome browser
AA seq
652 aa
AA seq
DB search
MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG
GKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRKEFPQATYICELKIDGLSISLTYE
AGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAVDITVRGECYMPKASFDRVNKQRQ
EAGEAEFANPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSEATSQSQVLEKLDALGFV
TNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLKVVDKYRKEQEIMPIPSHCPSCQSDLQHYEDEVALRCINPICPS
QLMSKLEHFASRDAMNIAGLGSSIVEKLFGAGLVHDVADIYKLTVDDLLTLEGFKEKSAD
KLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQ
VIAKSLTTFFASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNE
AKAKLEALGANVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagaatatcagaattagttagcgtgcttaatcaatacgctaaagagtattat
caattggaccaacctagcgtatcagatgcagaatatgatacgctttatcgtgaattagta
gagctagaaacggctcatccagaactgattttaccagatagtcctacccatcgggtcggg
ggaaagatgctagacggatttgaaaaatatagtcatgtttatcctctttttagtttgcag
gatgccttttctcgtgaagagttagaagcttttgaccagcgagttcgcaaggaatttcct
caagcaacgtatatctgtgaattgaagattgatggtctgtctatttccctgacctatgaa
gcgggtaatttagtcgtgggtgctacacgtggtgacggtagtgtcggtgaaaatatcaca
gaaaatctcaaacgagtggctgatgttcctttgaccttacccgaagctgtggacatcact
gtccgaggtgagtgttatatgccaaaagcttcctttgaccgtgttaacaaacagcgtcag
gaggctggtgaagctgaatttgctaatccgcgtaatgcagcagcagggaccctccgccag
cttgatacgggagtggtggcccagcgtggtctcgctactttcctctaccaagaggctagt
ccatctgaagcgactagtcagtcacaagtactggagaaactggatgctctgggatttgtg
accaaccacgaatattgcttggcggagtcgattgatgacacgtgggattttattgaaaaa
atagcagagcgtagagatgatttaccctatgagatagatggtgttgtcatcaaggtaaat
gatttagctatacaagaagaactaggatttacagttaaagcaccacgatgggcagtagct
tacaagtttccagctgaggaaaaagaagcagaaatcttgtcggttgattggactgttggc
cgaacaggtgttgtgacaccaacggccaatcttagtcctgttcaactggcaggaacgact
gtcagtcgagcaactttgcataacgtagattatatcgccgaaaaagatattcgtattggc
gatacggtcattgtttataaggcgggagatattattccagcagttctgaaagtggtggac
aagtatcgaaaagagcaagaaatcatgcccattcctagtcattgtccgtcttgtcagagc
gacctacaacactatgaggacgaagttgccctccgctgtatcaaccctatttgtcctagc
cagctgatgagtaagttggaacattttgcaagtcgggatgctatgaatatcgcagggcta
gggtcttcaatcgttgaaaaactctttggagcaggcttggtacacgatgttgctgatatt
tataaattaactgttgatgacctattgaccttggaaggtttcaaagaaaaatcagctgac
aagctctatcaagccattcaaacttctaagagtaactcagcagaatgcctcctatttgga
ctaggtattcgccatgtaggtagtaaggcaagtaagattttagtagaaaaatttggtgat
ttagaaactctagcatttgctgatcaagaagcaattgcttcgctagaaggtcttggtcag
gttattgctaagtctttgacaactttttttgctagtgagggtgcgcaacaacttttagcc
gaacttaaggaagctaaggtaaacttaacctatctcggacaagtagtagatgaaaatgct
gcgctatcgggtatgacagttgtactgactggtaaattggagcgaatgaaacgaaacgaa
gccaaagccaaattagaagctttaggggcaaatgtggcgggatctgtttctaaaaaaact
aatcttgtggttgccggaacagatgcaggcagtaaattgaccaaagcacaggagctaggt
atcgaaattaaagatgaggcttggttagagagcttgtaa
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