Streptococcus suis 98HAH33 (serotype 2): SSU98_1197
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Entry
SSU98_1197 CDS
T00515
Name
(GenBank) NAD-dependent DNA ligase (contains BRCT domain type II)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssv
Streptococcus suis 98HAH33 (serotype 2)
Pathway
ssv03030
DNA replication
ssv03410
Base excision repair
ssv03420
Nucleotide excision repair
ssv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSU98_1197
03410 Base excision repair
SSU98_1197
03420 Nucleotide excision repair
SSU98_1197
03430 Mismatch repair
SSU98_1197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssv03032
]
SSU98_1197
03400 DNA repair and recombination proteins [BR:
ssv03400
]
SSU98_1197
Enzymes [BR:
ssv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SSU98_1197
DNA replication proteins [BR:
ssv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SSU98_1197
DNA repair and recombination proteins [BR:
ssv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SSU98_1197
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSU98_1197
MMR (mismatch excision repair)
DNA ligase
SSU98_1197
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SSU98_1197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Bep_C_terminal
A24_N_bact
RNA_lig_T4_1
SLX1_C
Motif
Other DBs
NCBI-ProteinID:
ABP92355
UniProt:
A4W1W6
LinkDB
All DBs
Position
complement(1124068..1126026)
Genome browser
AA seq
652 aa
AA seq
DB search
MKTRISELVSVLNQYAKEYYQLDQPSVSDAEYDTLYRELVELETAHPELILPDSPTHRVG
GKMLDGFEKYSHVYPLFSLQDAFSREELEAFDQRVRKEFPQATYICELKIDGLSISLTYE
AGNLVVGATRGDGSVGENITENLKRVADVPLTLPEAVDITVRGECYMPKASFDRVNKQRQ
EAGEAEFVNPRNAAAGTLRQLDTGVVAQRGLATFLYQEASPSEATSQSQVLEKLDALGFV
TNHEYCLAESIDDTWDFIEKIAERRDDLPYEIDGVVIKVNDLAIQEELGFTVKAPRWAVA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLKVVDKYRKEQEIMPIPSHCPSCQSDLQHYEDEVALRCINPICPS
QLMSKLEHFASRDAMNIAGLGSSIVEKLFGAGLVHDVADIYKLTVDDLLTLEGFKEKSAN
KLYQAIQTSKSNSAECLLFGLGIRHVGSKASKILVEKFGDLETLAFADQEAIASLEGLGQ
VIAKSLTTFFASEGAQQLLAELKEAKVNLTYLGQVVDENAALSGMTVVLTGKLERMKRNE
AKAKLEALGANVAGSVSKKTNLVVAGTDAGSKLTKAQELGIEIKDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagaatatcagaattagttagcgtgctcaatcaatacgctaaagagtattat
caattggaccaacctagcgtatcagatgcagaatatgatacgctttatcgtgaattagta
gagctagaaacggctcatccagaactgattttaccagatagtcctacccatcgggtcggg
ggaaagatgctagacggatttgaaaaatatagtcatgtttatcctctttttagtttgcag
gatgccttttctcgtgaagagttagaagcttttgaccagcgagttcgcaaggaatttcct
caagcaacgtatatctgtgaattgaagattgatggtctgtctatttccctgacctatgaa
gcgggtaatttagtcgtgggtgctacacgtggtgacggtagtgtcggtgaaaatatcaca
gaaaatctcaaacgagtggctgatgttcctttgaccttacccgaagctgtggacatcact
gtccgaggtgagtgttatatgccaaaagcttcctttgaccgtgttaacaaacagcgtcag
gaggctggtgaagctgaatttgttaatccgcgtaatgcagcagcagggaccctccgccag
cttgatacgggagtggtggcccagcgtggtctcgctactttcctctaccaagaggctagt
ccatctgaagcgactagtcagtcacaagtactggagaaactggatgctctgggatttgtg
accaaccacgaatattgcttggcggagtcgattgatgacacgtgggattttattgaaaaa
atagcagagcgtagagatgatttaccctatgagatagatggtgttgtcatcaaggtaaat
gatttagctatacaagaagaactaggatttacagttaaagcgccacgatgggcagtagct
tacaagtttccagctgaggaaaaagaagcagaaatcttgtcggttgattggactgttggc
cgaacaggtgttgtgacaccaacggccaatcttagtcctgttcaactggcaggaacgact
gtcagtcgagcaactttgcataacgtagattatatcgccgaaaaagatattcgtattggc
gatacggtcattgtttataaggcgggagatattattccagcagttctgaaagtggtggac
aagtatcgaaaagagcaagaaatcatgcccattcctagtcattgtccgtcttgtcagagc
gacctacaacactatgaggacgaagttgccctccgctgtatcaaccctatttgtcctagc
cagctgatgagtaagttggaacattttgcaagtcgggatgctatgaatatcgcagggcta
gggtcttcaatcgttgaaaaactctttggagcaggcttggtacacgatgttgctgatatt
tataaattaactgttgatgacctattgaccttggaaggtttcaaagaaaaatcagctaac
aagctctatcaagccattcaaacttctaagagtaactcagcagaatgcctcctatttgga
ctaggtattcgccatgtaggtagtaaggcaagtaagattttagtagaaaaatttggtgat
ttagaaactctagcatttgctgatcaagaagcaattgcttcgctagaaggtcttggtcag
gttattgctaagtctttgacaactttttttgctagtgagggtgcgcaacaacttttagcc
gaacttaaggaagctaaggtaaacttaacctatctcggccaagtagtagatgaaaatgct
gcgctatcgggtatgacagttgtactgactggtaaattggagcgaatgaaacgaaacgaa
gccaaagccaaattagaagctttaggggcaaatgtagcgggatctgtttctaaaaaaact
aatcttgtggttgccggaacagatgcaggcagtaaattgaccaaagcacaggagctaggt
attgaaataaaagatgaggcttggttagagagcttgtaa
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