Streptomyces sp. SirexAA-E: SACTE_4696
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Entry
SACTE_4696 CDS
T01601
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssx
Streptomyces sp. SirexAA-E
Pathway
ssx03030
DNA replication
ssx03410
Base excision repair
ssx03420
Nucleotide excision repair
ssx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SACTE_4696
03410 Base excision repair
SACTE_4696
03420 Nucleotide excision repair
SACTE_4696
03430 Mismatch repair
SACTE_4696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssx03032
]
SACTE_4696
03400 DNA repair and recombination proteins [BR:
ssx03400
]
SACTE_4696
Enzymes [BR:
ssx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SACTE_4696
DNA replication proteins [BR:
ssx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SACTE_4696
DNA repair and recombination proteins [BR:
ssx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SACTE_4696
NER (nucleotide excision repair)
GGR (global genome repair) factors
SACTE_4696
MMR (mismatch excision repair)
DNA ligase
SACTE_4696
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SACTE_4696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
ILEI
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AEN12522
UniProt:
G2NFM5
LinkDB
All DBs
Position
5190768..5192966
Genome browser
AA seq
732 aa
AA seq
DB search
MAGEQQARELTGVSAEARERHALLSEQIEEHRFRYYVKDQPVVSDAEFDRLMRELEAVED
ENPQLRTPDSPTQKVAGPYTTEFTSVEHRERMLSLDNAFDDEELAAWAERVAKDVGRPGY
HFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNIRTIAEIPHRLTGDRVPALV
EIRGEVYFPMEAFEGLNARLVEAGDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIG
AREGLDIDRLSQAYDLLRDWGLPTARHNKVVDSLDGVREFVRYFGENRHSVEHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEAVEVA
GSEVEFATLHNQNVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECP
ECGTPLRPMKEGDVDLRCPNARSCPAQLRERVAYLAGRKCLDIDHFGYVAAAALTQPLEP
SEPPLRDEGDLFSLTIDQLLPIRAYVLDPDSGLPRRDPKTGEEKIATVFANQQGEPKKNA
LALLDGIAAAKQAPLARILTGLSIRHVGPVAAVELARQFRSVDRIDEASEAELAAADGVG
SIIAASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGPRPLEGLTVVVTGTLASHTR
DGAKDALQSLGAKVTGSVSKKTSFVVVGENPGSKYDKAMQLKVPVLDEAGFAVLLDEGPD
AAREAAVPAEEA
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgaacagcaggcgcgggagctgacgggtgtgtccgcggaggcgagggagcgg
cacgcgctgctgtccgagcagatcgaggagcaccgcttccggtactacgtgaaggaccag
ccggtcgtcagcgacgccgagttcgaccggctgatgcgcgagctggaggccgtcgaggac
gagaacccgcagctgcgcaccccggattcgccgacccagaaggtcgccgggccgtacacg
acggagttcacctccgtcgagcaccgcgagcggatgctgtcgctggacaacgccttcgac
gacgaggagctcgccgcctgggccgagcgcgtcgccaaggacgtgggccgccccggctac
cacttcctgtgcgagctcaaggtcgacggcctcgccgtcaacctcacctacgagcacggc
aggctgacccgcgcggcgacccgtggcgacggccgcaccggcgaggacatcacccccaac
atccgtacgatcgccgagatcccgcaccgcctcaccggcgaccgcgtccccgccctggtg
gagatccgcggcgaggtctacttcccgatggaggccttcgaggggctcaacgcccgtctg
gtggaggccggtgacaagcccttcgccaacccgcgcaacgcggcggccggttcactgcgc
cagaaggacccgaaggtcaccgccacccgcccgctgcacatggtggtgcacggcatcggc
gcccgtgagggcctcgacatcgaccggctctcccaggcgtacgacctgctgcgcgactgg
ggcctgccgaccgcccggcacaacaaggtcgtcgactccctcgacggcgtccgcgagttc
gtccggtacttcggcgagaaccgccactccgtggagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatccccctccagggccgcctgggctcgacctcccgcgccccgcgctgg
gcgatcgcctggaagtacgcccccgaggaggtcaacaccaagctggtgaacatccgcgtc
ggcgtcggacgcaccggcagggtcacgccctacgcccaggtcgaggccgtcgaggtggcg
ggctccgaggtcgagttcgccaccctgcacaaccagaacgtcgtgaaggccaagggcgtc
ctgatcggcgacacggtggtgctccgcaaggccggagacgtcatcccggagatcctcggc
ccggtcgtcgacctgcgggacggcagcgaacgcgagttcgtcatgcccgccgagtgcccc
gagtgcgggacaccgctgcgccccatgaaggagggcgacgtcgacctccgctgccccaac
gcgcggtcctgcccggcccagctgcgggagcgggtggcctatctcgccggccgcaagtgc
ctggacatcgaccacttcggctatgtggcggcggcggccctcacccagccgctggagccg
tccgagccgccgctgcgggacgagggcgacctgttctccctgacgatcgaccaactgctg
ccgatccgggcctacgtcctggacccggacagcggtctgccccggcgcgacccgaagacc
ggcgaggagaagatcgcgacggtcttcgccaaccagcagggcgagccgaagaagaacgcc
ctcgccctgctcgacggcatcgcggccgccaagcaggcgccgctggcccggatcctcacc
gggctgtcgatccgccatgtcggcccggtggccgcggtggagctggcccgccagttccgc
tccgtcgaccgcatcgacgaggcgtccgaggcggagctggccgccgccgacggcgtcgga
tccatcatcgcggcttcggtcaagcagtggttcgccgaggactggcaccgcgagatcctg
cgcaagtggcgggaggccggggtccggatggaggacgagggcgcgggcgaggacgagggg
ccccggcccctcgaaggactcacggtcgtcgtcaccggcaccctggcctcccacaccagg
gacggggcgaaggacgcgctgcagagcctcggggcgaaggtcaccggatccgtctcgaag
aagacctccttcgtcgtggtgggcgagaaccccggctccaagtacgacaaggcgatgcag
ctcaaggtgcccgtcctcgacgaggccgggttcgccgtcctcctcgacgaggggcccgac
gcggcccgggaggcagccgtgcccgccgaggaggcctga
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