Streptomyces sp. SirexAA-E: SACTE_5720
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Entry
SACTE_5720 CDS
T01601
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssx
Streptomyces sp. SirexAA-E
Pathway
ssx03030
DNA replication
ssx03410
Base excision repair
ssx03420
Nucleotide excision repair
ssx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SACTE_5720
03410 Base excision repair
SACTE_5720
03420 Nucleotide excision repair
SACTE_5720
03430 Mismatch repair
SACTE_5720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssx03032
]
SACTE_5720
03400 DNA repair and recombination proteins [BR:
ssx03400
]
SACTE_5720
Enzymes [BR:
ssx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SACTE_5720
DNA replication proteins [BR:
ssx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SACTE_5720
DNA repair and recombination proteins [BR:
ssx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SACTE_5720
NER (nucleotide excision repair)
GGR (global genome repair) factors
SACTE_5720
MMR (mismatch excision repair)
DNA ligase
SACTE_5720
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SACTE_5720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
Nlig-Ia
HHH
DUF7575
UPF0758_N
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AEN13509
UniProt:
G2NQ28
LinkDB
All DBs
Position
6497253..6499382
Genome browser
AA seq
709 aa
AA seq
DB search
MDGRMMPMTTNSAVVLADTASYAAAVEEATQAAAAYYATGESLLDDDAYDRLARGIAAYE
AEHPQEVLAASPTGKVAGGAAVGDVPHTVPMLSLDNVFSAEQFVTWTASVERRIGRPVAA
WSVEPKLDGLAVAARYQQGRLDRLITRGDGTAGEDVSHAIGTVLGLPERLNEPATLEVRG
EILMTDEQFDAANAARTAHGAAPFANPRNGAAGTLRAKDRPYRVEMTFFAYAALPLPGSG
TSAETLTGLPHSEVLRHVAGLGVRTAADTAVAPRTAGTVEEVQAGVEDIAGQRATLPFGI
DGIVIKADLAADQRDAGTGTRAPRWAIAYKLPAVEKVTRLLGVEWNVGRTGIIAPRAVLE
PVEIDGSTVGYATLHNPADITRRDLRLGDQVMVYKAGDIIPRIEAPVAHLRTGEERPIEF
PQSCPQCGSEIDTSEQRWRCVRGRDCRLVASVSYAAGRDQLDIEGLGATRVVQLVDAGLV
ADFADLFTLEREQLLGLERMGETSTDNLLAAVETARSRPLSRVFCALGVRGTGRSMSRRI
ARHFATMDRIAAADTEALQRVDGIGKEKAAAVVAELAELAPLIAKLVAAGVNMTEPGATP
PPDPGTEADEERAGAEGVSEGAGGTGLPLDAMTVVVTGAMTGVLEKLSRNEMNELIERAG
GKASSSVSKRTSLLVAGEKAGSKRTKAEGLGVRIATPDEFAELVGSFLG
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggacggcaggatgatgcccatgacgacgaactcagctgttgtgctcgccgataccgcc
tcgtacgccgccgcggtcgaagaggcgacacaggccgccgccgcgtactacgccacgggc
gagagcctgctcgacgacgacgcgtacgaccgcctggcgcggggcatagccgcatacgag
gcggagcacccgcaggaggtgctggccgcctcgccgacggggaaggtcgcgggcggcgcg
gcggtcggcgacgtgccgcacacggtgcccatgctctccctggacaacgtgttctccgcc
gagcagttcgtcacctggaccgcgtccgtggagcggcggatcggccggcccgtcgccgcc
tggagcgtggagcccaagctcgacggcctcgccgtcgcggcccgttaccagcaggggcgt
ctcgaccggctgatcacccggggggacggcacggccggtgaggacgtctcgcacgccatc
ggcacggtgctcggtctgcccgagcggctgaacgagcccgccaccctcgaggtgcgcggc
gagatcctcatgaccgacgagcagttcgacgccgccaacgccgcacgtacggcacacggc
gccgccccgttcgccaacccgcgcaacggcgcggcgggcaccctgcgggccaaggaccgg
ccctaccgcgtcgagatgaccttcttcgcctacgcggccctcccgctgcccggctccggc
acgtcggcggagaccctgaccggcctcccgcacagtgaggtcctccgccacgtcgcgggg
ctcggcgtgcgcaccgccgcggacacggcggtggcgccgcgcaccgcggggacggtggag
gaggtgcaggcgggggtggaggacatcgccgggcagcgcgccaccctgcccttcgggatc
gacggcatcgtgatcaaggccgacctggccgccgaccagcgcgacgccggcaccggcacg
cgggcaccgcgctgggccatcgcctacaagcttccggcggtcgagaaggtcacccggctg
ctcggcgtcgagtggaacgtcggcaggaccggcatcatcgcgccgcgcgcggtgctggag
cccgtggagatcgacggatccaccgtcggctacgccacgctgcacaacccggccgacatc
acccgccgcgacctgcgcctgggcgaccaggtgatggtctacaaggcgggcgacatcatc
ccccgtatcgaggcgcccgtcgcccacctgcggacgggggaggagcggcccatcgagttc
ccgcagtcctgcccgcagtgcggctccgagatcgacaccagtgagcagcgctggcgctgc
gtccggggccgtgactgccgtctcgtcgcctccgtctcgtatgcggcgggccgcgaccag
ctcgacatcgagggtctcggcgccacccgggtcgtccagctcgtcgacgcgggtctcgtc
gccgacttcgccgacctcttcaccctggagcgggagcagttgctcggactggagcggatg
ggtgagacgtccaccgacaatctgctggccgctgtggagaccgcgcgcagccgcccgctg
tcacgcgtcttctgcgccctcggcgtccgcggcacggggcgttccatgtcccgccggatc
gcccgtcatttcgcgaccatggaccggatcgccgccgccgacaccgaggccctccagcgg
gtcgacggcataggcaaggagaaggccgccgcggtcgtcgcggagctggcggaactggct
ccgctgatcgccaagctggtggccgccggggtcaacatgaccgagcccggcgccacgccg
ccgccggaccccgggaccgaggcggacgaggagagggcgggcgccgagggcgtgagcgag
ggcgccggtgggacaggactgccgctcgacgcgatgaccgtcgtggtcaccggcgccatg
accggcgtcctggagaagctctcgcgcaacgagatgaacgaactgatcgagcgggccggc
gggaaggcgtcgtcgagcgtgtccaagcgcacgagcctgctcgtggccggtgagaaggcc
gggtccaagcggaccaaggcggaggggctgggggtcaggatcgccacaccggacgagttc
gcggagctggtcgggtcgttcctgggctga
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integrated database retrieval system
