KEGG   Sphingobium sp. SYK-6: SLG_p_01120
Entry
SLG_p_01120       CDS       T01622                                 
Symbol
virD4
Name
(GenBank) type IV secretory pathway VirD4 component
  KO
K03205  type IV secretion system protein VirD4 [EC:7.4.2.8]
Organism
ssy  Sphingobium sp. SYK-6
Pathway
ssy03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:ssy00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    SLG_p_01120 (virD4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:ssy02044]
    SLG_p_01120 (virD4)
Enzymes [BR:ssy01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     SLG_p_01120 (virD4)
Secretion system [BR:ssy02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   SLG_p_01120 (virD4)
SSDB
Motif
Pfam: T4SS-DNA_transf TraG-D_C TrwB_AAD_bind
Other DBs
NCBI-ProteinID: BAK68700
UniProt: G2IU25
LinkDB
Position
pSLPG:106060..108024
AA seq 654 aa
MPVQRNFWIIGLSVAGGTLLCCAIAVPVALFGMGQIGPNTDITALPAWLWYYRADPLLIL
WLKRGALAGAVVVGLLAIGILRRGPALHGTARFAREGEIRREGLRDAAGIVVGRKAGRFL
IFGGSEHVLLEAPTRAGKGVGVVIPNLLTWPDSVIVLDVKRENWGASAGYRARAGQAVHL
FDPLDAEGRTARYNPLAHIRRTDDTEVINELQKIAGMLFPAPERSDPFWAEAARAAFVGV
GALVASNPGLPFTIGEIYRRLTSGDPKSDLPAALQEARRVGQRLSQACVSAIQDFTSASD
NTFSGIKQTITARLNLWLNPMVDTATSESDFDLREVRRRRMSIYLGVSPDNIDRIAPIYS
LFLQQLVDLNTRDLPEGASNVPVLVLLDEFARLGKASVIASGFSYVAGYGLRLVPVIQSR
SQLRAIYGPDVTDEIIANCGLEVVFTPKELKVANELSERLGFFTMNVKSRSRTIHGLLAN
RSISESDQRRALLLPQELMQLPKNELLLLRAGIPPIRGRKIAYYRMPRFTRRVVAPPVPS
ARPIAAMLSPPTPASARQGAGTPGLSGAPQQPATSSGETIQEEIVMREMTDAELAGAAKI
TDDMLVLGDLAELPPPGDEAAAIAFVSAMVERALLPSVGQPSTSIIQERTAHVR
NT seq 1965 nt   +upstreamnt  +downstreamnt
atgccggtgcagcgtaacttctggatcatcggcctgtccgttgccggcggcaccttattg
tgctgcgccatcgccgtgccagttgccctctttgggatgggccagatcggcccgaacacc
gacatcacggccttgcccgcatggttgtggtactatcgggcggacccgctgcttattctt
tggctaaagcgcggggctctggcgggcgctgttgtggtcgggctcctcgcaatcgggatt
ctgcgccgcgggccggcattgcacggcaccgcccggtttgcgcgcgaaggcgagatccgg
cgggagggccttcgcgacgctgccggcatcgttgtcggccgcaaggctggacgtttcctg
atattcggcgggagcgagcatgttctgctcgaggcgcccacgcgagcgggcaagggcgtg
ggcgtcgtcattcccaatctgctgacctggccagattcggtgatcgtgctcgacgtgaag
cgggagaactggggcgcaagcgccggctatcgggcacgggccggccaagcagtgcatctg
ttcgatccgctcgacgcggaggggcggacggcgcggtacaaccccctggcgcacatcagg
cggactgatgacaccgaagtcatcaacgagctgcagaagatcgcgggcatgctgttcccc
gcgcccgagcgatccgatcccttctgggcggaggccgcgcgagcggcctttgtcggcgtc
ggcgccctggtcgcatccaacccgggcctgcccttcaccatcggcgagatataccgccgc
ctcacgagcggggatcccaagagcgaccttcccgcagcgcttcaggaagctcgcagggtg
ggccagcgcctcagccaagcttgcgtgtccgcgatccaagatttcacctcggcctcggac
aacaccttttccgggatcaagcagaccatcaccgcacggctcaatctctggctcaacccc
atggtggataccgccacctcggagagcgacttcgacctgcgcgaggtgcggcgtcggcgc
atgtcgatttaccttggcgtgtcgcctgacaatatcgaccgcatcgcgccgatctacagt
ctgttcctgcagcaactcgtggatctcaacacccgcgaccttcctgagggcgctagcaat
gtcccggtcctggtcctgctcgacgagttcgccaggctcggcaaagcctcggtgattgcg
agcggcttctcctacgtcgccggctatggcctgcgcctggttccggtcattcagagccga
tcccagcttcgcgcaatctacggtcccgatgtcaccgacgagatcatcgccaattgcggc
ctcgaggttgtcttcacgcctaaggagctgaaggtcgcgaacgaactttccgaacggctc
ggctttttcacgatgaacgtgaaatcccgcagccgtaccatccacgggctactggcgaac
cggagcatctcggaatctgatcagcgccgcgcgctcctgctgccgcaagagctcatgcag
ctgccgaagaacgagctcctgctccttcgcgccggcatccccccaattcgagggcgcaag
atcgcctattaccggatgccgcgcttcactcggcgggtggttgctccgcctgtgccgtcc
gcccgtccaatcgcggcaatgctttccccacctacgccggcttcagcgcggcagggcgct
ggtacacccggtctgagcggcgccccacagcagccggcgacaagctcgggcgagaccata
caggaggaaattgtgatgcgggaaatgaccgacgccgagctggcaggtgcggccaagatc
acggatgacatgctggttctgggcgacctggccgaactgccgcccccgggcgacgaggcc
gccgcgatcgcgttcgtgtcggcgatggtcgagcgggcacttttgccatcggtcgggcag
ccatccacatccattatccaggaaaggacagcccatgtccgctga

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