Saccharothrix syringae: EKG83_40420
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Entry
EKG83_40420 CDS
T06258
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssyi
Saccharothrix syringae
Pathway
ssyi03030
DNA replication
ssyi03410
Base excision repair
ssyi03420
Nucleotide excision repair
ssyi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EKG83_40420 (ligA)
03410 Base excision repair
EKG83_40420 (ligA)
03420 Nucleotide excision repair
EKG83_40420 (ligA)
03430 Mismatch repair
EKG83_40420 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssyi03032
]
EKG83_40420 (ligA)
03400 DNA repair and recombination proteins [BR:
ssyi03400
]
EKG83_40420 (ligA)
Enzymes [BR:
ssyi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EKG83_40420 (ligA)
DNA replication proteins [BR:
ssyi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EKG83_40420 (ligA)
DNA repair and recombination proteins [BR:
ssyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EKG83_40420 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EKG83_40420 (ligA)
MMR (mismatch excision repair)
DNA ligase
EKG83_40420 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EKG83_40420 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
zf-IS66
UBA_HOIP
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QFZ24807
UniProt:
A0A5Q0HEQ2
LinkDB
All DBs
Position
complement(9633614..9635812)
Genome browser
AA seq
732 aa
AA seq
DB search
MNPTDASAEGVEDVPAGVRERHAALAEVVRGHQFRYYVLDAPTISDGEFDALLRELEALE
QAHPGLATPDSPTQRVGGTFSTEFTAVDHLERMLSLDNAFSRDELHAWFERVHKEVGDGA
HFLCELKIDGLAINLLYEHGTLVRALTRGDGRTGEDVTLNVRTLRDVPETLTGTAEHPVP
ALVEVRGEVFFAVEDFLELNARLVEAGRPPFANPRNTAAGSLRQKDPKVTASRRLRLICH
GLGKREGFELTRQSDAYEALRAWGLPVSSHTRVLTTFDEVNAHVEYWGAHRHDAEHEIDG
VVVKVDEVAWQRRLGSTSRAPRWAIAFKYPPEEATTTLLDIKVQVGRTGRVTPFAVMEPV
KVAGSTVARATLHNASEVKRKGVLIGDRIVIRKAGDVIPEVLGPVVDARPADAREFEMPT
TCPECGHGLRPMKEGDVDIRCPNAAGCPGQLRERLAYLASRSALDIEVLGYEAAAALVES
DAYGDEGDLFSLGEEELLGVDLFRTIGGELTANALKLLDNLEAVKQRPLWRVLVALSIRH
VGPTAARALAREFGSIDRVVSASEEELAAAEGVGPTIAAAVREWVETPWRQAVVEKWRAA
GVRMAEERDTSTPRNLEGLSIVVTGSLEGFSRDEAKEAILVRGGKAAGAVSKKTAFVVVG
ESPGSKAEKAEQLKVPVLDEAGFRVLLERGPEAAREVATVTEDPTPDPTAADATAAPAVA
ADPTTEPATAEV
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
ttgaacccgaccgacgcctccgccgagggcgtcgaggacgtgcccgcgggcgtgcgggag
cggcacgccgccctcgcggaggtcgtgcgcggccaccagttccgctactacgtcctggac
gccccgacgatcagtgacggtgagttcgacgcgctgctgcgcgagctggaggccctggag
caggcccaccccggcctggccacgcccgactcgcccacccagcgggtcggcggcacgttc
tccaccgagttcaccgcggtcgaccacctggagcggatgctcagcctggacaacgcgttc
tcgcgcgacgagctgcacgcctggttcgagcgggtgcacaaggaggtcggcgacggcgcg
cacttcctgtgcgagctgaagatcgacggcctggccatcaacctgctctacgagcacggg
acgctggtccgcgccctcaccaggggcgacggccgcaccggcgaggacgtgacgctcaac
gtccgcaccctgcgcgacgtgcccgagacgctgaccggcaccgccgagcaccccgtgccc
gcgctggtcgaggtgcgcggcgaggtgttcttcgcggtggaggacttcctggagctcaac
gcccgcctggtcgaggcgggcaggccgccgttcgccaacccgcgcaacaccgcggccggc
tcgctgcggcagaaggacccgaaggtcaccgcgtcgcgcaggctgcgcctgatctgccac
ggcctgggcaagcgcgagggcttcgagctgaccaggcagtccgacgcctacgaggcgctg
cgcgcgtggggcctgccggtgtcctcgcacaccagggtgctcaccacgttcgacgaggtc
aacgcgcacgtcgagtactggggcgcccaccggcacgacgccgagcacgagatcgacggc
gtcgtggtcaaggtcgacgaggtcgcctggcagcggcggctgggcagcacgtcgcgcgcg
ccgcgctgggcgatcgcgttcaagtacccgcccgaggaggccaccacgaccctgctcgac
atcaaggtgcaggtcggccgcaccggccgggtgacgccgttcgccgtgatggaaccggtg
aaggtggccggctccacggtcgcgcgggcgaccctgcacaacgcgagcgaggtcaagcgc
aagggcgtgctcatcggcgaccggatcgtcatccgcaaggccggcgacgtgatccccgag
gtgctcggcccggtggtcgacgcccgcccggccgacgcccgcgagttcgagatgcccacc
acctgcccggagtgcggccacggcctgcgcccgatgaaggagggcgacgtcgacatccgc
tgccccaacgcggccggctgccccggccagctgcgggagcgcctggcgtacctggcgtcg
cggtcggcgctggacatcgaggtcctgggctacgaggccgcggcggccctggtcgagtcg
gacgcgtacggcgacgagggcgacctgttctcgctgggcgaggaggagttgctgggcgtc
gacctgttccggaccatcggcggggagctgacggccaacgcgctcaagctcctggacaac
ctggaggcggtcaagcagcgtcccctgtggagggtcctggtggccctgtccatccgccac
gtcggcccgacggcggcccgcgcgctggcccgggagttcggctcgatcgaccgcgtcgtc
tccgcgtcggaggaggaactggccgcggccgagggcgtgggcccgaccatcgccgccgcg
gtacgcgagtgggtcgagaccccgtggcggcaggcggtggtcgagaagtggcgcgcggcc
ggggtgcggatggccgaggagcgcgacacctcgacgccgcggaacttggaggggctgtcg
atcgtggtgacggggtcgctggagggcttctcgcgcgacgaggccaaggaggcgatcctg
gtgcgcggggggaaggcggcgggggcggtgtcgaagaagacggcgttcgtggtggtgggg
gagtcgccggggtcgaaggcggagaaggcggagcagctcaaggtgccggtgctggacgag
gccgggttccgggtgctgttggagcggggaccggaggcggcccgcgaggtggcgaccgtg
accgaggacccgaccccggaccccactgctgccgacgcgaccgctgccccggctgtggct
gccgacccgacaaccgagcccgcaacagccgaggtctga
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