Symphalangus syndactylus (siamang): 129459764
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Entry
129459764 CDS
T10134
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X10
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
ssyn Symphalangus syndactylus (siamang)
Pathway
ssyn03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ssyn00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
129459764 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssyn03000
]
129459764 (KDM2B)
04121 Ubiquitin system [BR:
ssyn04121
]
129459764 (KDM2B)
03036 Chromosome and associated proteins [BR:
ssyn03036
]
129459764 (KDM2B)
Enzymes [BR:
ssyn01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
129459764 (KDM2B)
Transcription factors [BR:
ssyn03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
129459764 (KDM2B)
Ubiquitin system [BR:
ssyn04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
129459764 (KDM2B)
Chromosome and associated proteins [BR:
ssyn03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
129459764 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
129459764 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
129459764
NCBI-ProteinID:
XP_055092902
LinkDB
All DBs
Position
13:complement(117169706..117328948)
Genome browser
AA seq
1299 aa
AA seq
DB search
MRQLLRPIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKDFNYEYV
QREALRVPLIFREKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEMSMSQFV
RYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNA
IAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEW
VLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPM
QLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSHLTQEYQRESMLIDAPRKP
SIDGFSSDSWLEMEEEACDQQPQEEEEKDEEGEGRDRAPKPPTDGSTSPTSTPSEDQEAL
GKKPKAPALRFLKRTLSNESEESVKSTTLPVDYPKTPTGSPATEVSAKWTHLTEFELKGL
KALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHADDDPSLAITGVPVVTWPKKTP
KNRAVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFG
GPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHP
GCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDN
KEGQEPAKRRSECEEAPRRRSDEHPKKVPPDGLLRRKSDDVHLRKKRKYEKPQELSGRKR
ASSLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNAED
RMALANKPLRRFKQEPEDDLPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEKKKVKMRR
KRRLPNKELSRELSKELNHEIQRTENSLANENQQPIKSEPESEGEEPKRPPGICERPHRF
SKGLNGTPRELRHQLGPSLRSPPRVISRPPPSVSPPKCMQMERHVIRPPPISPPPDSLPL
DDGAAHVMHREVWMAVFSYLSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLM
LSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALCSSSCPLLRT
LDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHM
PLLSKLHLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICH
IDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atgaggcagctgctgcgcccgattgaccgccagcgatacgacgagaacgaggacttgtcg
gacgtggaggagatcgtcagcgtccgcggcttcagcctggaggagaagcttcgcagccag
ctgtaccagggggactttgtgcacgccatggagggcaaagatttcaactatgagtacgta
cagagagaagctctcagggttcccctgatatttcgagaaaaggatggactgggaattaag
atgcctgaccctgatttcacagtccgagacgtcaaactcctagtggggagccggcggctt
gtggacgtgatggatgtgaacacccagaagggcacggagatgagcatgtcccagtttgtg
cgttactacgagacgcccgaggcccagcgggacaagctgtacaacgtcatcagcttagag
ttcagccacaccaagttggagcacttggtcaagcgtccgactgtggtagacctggtggac
tgggtggacaacatgtggccccagcatctgaaggagaagcagacagaagccacgaacgcc
attgcagagatgaagtacccgaaagtgaagaagtactgtctgatgagcgtgaaaggttgt
ttcaccgacttccacatcgactttggaggcacttccgtttggtaccatgttttccggggt
gggaagattttttggctgattcctccaacgctgcacaatttggcgctgtacgaggagtgg
gtgctgtcaggcaaacaaagtgacatctttctgggagaccgtgtggaacgatgccaaaga
attgagctgaagcagggctacacatttttcatcccttctggttggatccatgccgtctac
acccctgtagactctttggtgttcggcggaaacatcctgcacagttttaacgtgcccatg
cagctgcggatctacgagatcgaggacaggacgcgggtgcagcccaaattccgttacccc
ttctactatgagatgtgctggtatgtcctggagagatacgtgtactgtgtgacccagcgc
tcccacctcactcaggaataccagagggagtcgatgcttattgatgccccgaggaagccc
agcatagacggcttctcttcggattcctggctggagatggaggaggaggcctgtgatcag
cagcctcaggaggaggaggagaaggacgaggagggcgagggcagggacagggcacccaaa
ccgcccaccgatggctccacttcacctaccagcacgccctccgaggaccaggaggccctt
gggaagaagcccaaagcacctgccttgcgattcctcaaaaggactttgtctaacgagtcg
gaggagagtgtgaagtccaccacattgcccgtagactaccccaagacccccaccggctct
cctgccacagaggtctctgccaaatggacccatctcaccgagtttgaactgaagggcctg
aaagctctggtggagaaactggaatccctcccggagaacaagaagtgtgtccccgagggc
atcgaggacccccaggcactcctggagggtgtgaagaacgtcctgaaggagcacgcggat
gatgaccctagtctggctatcactggggtccctgtggtgacttggccaaagaagactcca
aagaaccgggctgtgggtcggcccaaggggaagctgggcccggcctccgcggtgaagttg
gccgccaaccggacaacggcaggagctcggcggcgccggacgcgatgccgcaagtgcgag
gcctgcctgcggaccgagtgcggagagtgccacttctgcaaggacatgaagaagttcggg
ggccccgggcgcatgaagcagagctgcatcatgcggcagtgcatcgcgccagtgctgccc
cacactgccgtgtgccttgtgtgtggcgaggcggggaaggaagacacggtggaagaggag
gaaggcaagtttaacctcatgctcatggagtgctccatctgcaacgaaatcatccaccct
ggatgccttaagattaaggagtcagagggtgtggtcaacgacgagcttccaaactgctgg
gagtgtccgaagtgtaaccacgccggcaagaccgggaaacaaaagcgtggccctggcttt
aagtacgcctccaacctgcccggctccctgctcaaggagcagaagatgaaccgggacaac
aaggaagggcaggagcctgccaagcggaggagcgagtgtgaggaggcgccccggcgcagg
tcggatgagcaccccaagaaggtgccgccggacggcctcctgcgcagaaagtctgatgac
gtgcacctgaggaagaagcggaaatacgagaagccccaggagctgagtggacgcaagcgg
gcctcatcgcttcaaacgtcccccggttcctcctctcacctctcgccgaggccccctcta
ggcagcagcctcagcccctggtggagatccagtctcacttacttccagcagcagctcaaa
cctggcaaagaagataagcttttcaggaaaaagcggcggtcctggaagaacgccgaggac
cgcatggcgctggccaacaagcccctcaggcgcttcaagcaggaacccgaggacgatctg
cccgaagcgccccccaagaccagggagagcgaccactcccgctccagctcccccaccgcg
ggacccagcaccgaaggggccgagggcccggaggagaagaagaaggtgaagatgcgccgg
aagcggcggcttcccaacaaggagctgagcagggagctgagcaaggagctcaaccacgag
atccagaggacggagaacagcctggccaacgagaaccagcagcccatcaagtcggagcct
gagagtgagggcgaggagcccaagcggcccccaggcatctgcgagcgcccccaccgattc
agcaaggggctcaacggcacgccccgggagctgcggcaccagctggggcccagcctgcgc
agcccgccccgcgtcatctcccgacccccaccctccgtgtccccgcccaagtgtatgcag
atggagcgccatgtgatccggccaccccccatcagccccccgcctgattcgctacccctg
gatgatggggcagcccacgtcatgcacagggaggtgtggatggccgtcttcagctacctc
agccaccaagacctgtgtgtctgcatgcgggtctgcaggacctggaaccgctggtgctgc
gataagcggttgtggacccgcattgacctgaaccactgcaagtctatcacacccctgatg
ctgagcggcatcatccggcgacagcccgtctccctcgacctcagctggaccaatatctcc
aagaagcagctgagctggctcatcaaccggctgcctgggctccgggacttggtgctgtca
ggctgctcatggatcgcggtctcggccctttgcagctccagttgtccgctgctccggacc
ctggatgtccagtgggtggagggactaaaggatgcccagatgcgggatctcctgtccccg
cccacggacaacaggccaggtcagatggataatcggagcaagctccggaacatcgtggag
ctgcgcctggcgggcctggacatcacagatgcctccctgcggctcatcatccgccacatg
cccctgctctccaagctccacctcagttactgtaaccacgtcaccgaccagtccatcaac
ctgctcaccgctgttggcaccaccacccgagactccttaaccgagatcaacctgtctgac
tgcaataaggtcactgatcagtgcctgtccttcttcaaacgctgtggaaacatctgtcat
attgacctgaggtactgcaagcaagtcaccaaggaaggctgtgagcagttcatagccgag
atgtctgtgagtgtccagtttgggcaagtagaagaaaaactcctgcaaaaactgagttag
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integrated database retrieval system
