KEGG   Symphalangus syndactylus (siamang): 129461245
Entry
129461245         CDS       T10134                                 
Symbol
CLEC4M
Name
(RefSeq) C-type lectin domain family 4 member M isoform X1
  KO
K06563  C-type lectin domain family 4 member L/M
Organism
ssyn  Symphalangus syndactylus (siamang)
Pathway
ssyn03260  Virion - Human immunodeficiency virus
ssyn03264  Virion - Flavivirus and Alphavirus
ssyn03265  Virion - Ebolavirus, Lyssavirus and Morbillivirus
ssyn03273  Virion - Lassa virus and SFTS virus
ssyn04145  Phagosome
ssyn04625  C-type lectin receptor signaling pathway
ssyn05152  Tuberculosis
ssyn05162  Measles
Brite
KEGG Orthology (KO) [BR:ssyn00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03260 Virion - Human immunodeficiency virus
    129461245 (CLEC4M)
   03264 Virion - Flavivirus and Alphavirus
    129461245 (CLEC4M)
   03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
    129461245 (CLEC4M)
   03273 Virion - Lassa virus and SFTS virus
    129461245 (CLEC4M)
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    129461245 (CLEC4M)
 09150 Organismal Systems
  09151 Immune system
   04625 C-type lectin receptor signaling pathway
    129461245 (CLEC4M)
 09160 Human Diseases
  09172 Infectious disease: viral
   05162 Measles
    129461245 (CLEC4M)
  09171 Infectious disease: bacterial
   05152 Tuberculosis
    129461245 (CLEC4M)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ssyn04131]
    129461245 (CLEC4M)
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:ssyn04054]
    129461245 (CLEC4M)
   04515 Cell adhesion molecules [BR:ssyn04515]
    129461245 (CLEC4M)
   04090 CD molecules [BR:ssyn04090]
    129461245 (CLEC4M)
   04091 Lectins [BR:ssyn04091]
    129461245 (CLEC4M)
Membrane trafficking [BR:ssyn04131]
 Endocytosis
  Phagocytosis
   C-lectin receptors
    129461245 (CLEC4M)
Pattern recognition receptors [BR:ssyn04054]
 Membrane-bound pattern recognition receptors
  C-type lectin receptors
   129461245 (CLEC4M)
Cell adhesion molecules [BR:ssyn04515]
 Lectins
  Selectins and C-type lectins
   129461245 (CLEC4M)
CD molecules [BR:ssyn04090]
 Proteins
  129461245 (CLEC4M)
Lectins [BR:ssyn04091]
 C-Type lectins
  Asialoglycoprotein and DC receptors
   129461245 (CLEC4M)
SSDB
Motif
Pfam: Lectin_C DUF2170 DUF2730 Occludin_ELL Baculo_PEP_C Med10 DUF2357 Vps5 Com_YlbF UL45
Other DBs
NCBI-GeneID: 129461245
NCBI-ProteinID: XP_055096235
LinkDB
Position
13:33790855..33796553
AA seq 399 aa
MSDCKEPRVQPLGLLEEDPTTSGIRLFPRDFQFQQTHGHKSSTGCLGHGPLVLQLLSFAL
LAGVLVAILVQVYKVPSSLSQEQSKQDVIYQNLTQLKAAVGELSEKSKLQEIYQELTRLK
AAVGELPEKSKQQEIYQELTQLKASVGELPEKSQLQEIYQELTRLKAAVGELPEESRLQE
IYQELTRLKAAVGELPEKSRLQEIYQELTQLKAAVGELPEKSKLQEIYQELTRLKAAVGE
LPDQSKQQQIYQELTDLKTAFERLCCRCPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVG
AQLVVIKSAEEQNFLQLQTSRSNRFSWMGLSDLNQEGTWQWVDGSPLSSSFQRYWNSGEP
NNSGDEDCAEFSGSGWNDNRCNVDNYWICKKPIACFRDE
NT seq 1200 nt   +upstreamnt  +downstreamnt
atgagtgactgcaaggaaccaagggtgcagccgctgggcctcctggaagaagatccgaca
accagtggcatcagactttttccaagagactttcaattccagcagacacatggccacaag
agctctacagggtgtcttggccatggccccctggtgctgcaactcctctccttcgcgctt
ttggctggggtcctggtggccatccttgtccaagtgtacaaggtccccagctccctaagt
caggaacaatccaagcaagacgtaatctaccagaatctgacccagcttaaagctgcagtg
ggtgagctctcagagaaatccaagctgcaggagatctaccaggagctgacccggctgaag
gctgcagtgggtgagcttccagagaaatctaagcagcaggagatctaccaggagctgacc
cagctgaaggcttcagtgggtgagcttccagagaaatctcagctgcaggagatctaccag
gagctgacccggctgaaggctgcagtgggtgagcttccagaggaatctaggctgcaggag
atctaccaggagctgacccggctgaaggctgcagtgggtgagcttccagagaaatctagg
ctgcaggagatctaccaggagctgacccagctgaaggctgcagtgggtgagttgccagag
aaatccaagctacaggagatctaccaggagctgacccggctgaaggctgcagtgggtgag
ttgccagaccagtccaagcagcagcaaatctatcaagaactgaccgatttgaagactgca
tttgaacgcctgtgctgccgctgtcccaaggactggacattcttccaaggaaactgttac
ttcatgtctaactcccagcggaactggcacgactccgtcaccgcctgccaggaagtgggg
gcccagctcgtcgtaatcaaaagtgctgaggagcagaacttcctgcagctgcagacttcc
aggagtaaccgcttctcctggatgggactttcagacctaaatcaggaaggcacgtggcaa
tgggtggacggctcacctctgtcatccagcttccagcggtactggaacagtggagaaccc
aacaacagcggggatgaagactgtgcggaatttagtggcagtggctggaacgacaatcga
tgtaacgtcgacaattactggatctgcaaaaagcccatagcctgcttcagagacgaatag

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