Spiroplasma syrphidicola: SSYRP_v1c09240
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Entry
SSYRP_v1c09240 CDS
T02677
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ssyr
Spiroplasma syrphidicola
Pathway
ssyr03030
DNA replication
ssyr03410
Base excision repair
ssyr03420
Nucleotide excision repair
ssyr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SSYRP_v1c09240 (ligA)
03410 Base excision repair
SSYRP_v1c09240 (ligA)
03420 Nucleotide excision repair
SSYRP_v1c09240 (ligA)
03430 Mismatch repair
SSYRP_v1c09240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssyr03032
]
SSYRP_v1c09240 (ligA)
03400 DNA repair and recombination proteins [BR:
ssyr03400
]
SSYRP_v1c09240 (ligA)
Enzymes [BR:
ssyr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SSYRP_v1c09240 (ligA)
DNA replication proteins [BR:
ssyr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SSYRP_v1c09240 (ligA)
DNA repair and recombination proteins [BR:
ssyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SSYRP_v1c09240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SSYRP_v1c09240 (ligA)
MMR (mismatch excision repair)
DNA ligase
SSYRP_v1c09240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SSYRP_v1c09240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
Gp7_helical
DUF507
HHH
DUF6279
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
16152984
NCBI-ProteinID:
AGM26513
UniProt:
R4U783
LinkDB
All DBs
Position
complement(994864..996867)
Genome browser
AA seq
667 aa
AA seq
DB search
MNQAAAQSRIEELKQSLEEWNYQYYVLDNPSVSDQEYDRAMQELIALEQEFPALITLDSP
TQRVSGTVSEKFSKYFHTSPMLSLGNAFNYEDLVHFDEQIKELTGLSAIDYTCELKIDGL
SISLVYQNHLLVMGATRGDGIAGEDVTTNIKKIKSIPLKVAQPNLIVRGEVYLSLEEFNK
INAERAAKDEPLFANPRNAAAGTLRQLDSTIVQKRNLDAFLYYYVNAIEDGIPTQYEALK
HLEGLKFKTNKEYQLCHNVDEVWNYIQKYQDLRHQLGYEIDGIVIKVNDFKLYNRIGYTA
KNPKWAVAYKFPAEIVTTKLVDIFPSVGRTGKITYNAVLEPVRIAGTIVRAATLHNGDFI
IKRDIRIGDYVELKKAGDIIPEVIQPLLDRRPEETVKWTMAKKCPDCANWLEKTDDEVDQ
YCVNSLCPKKITRGLEHFCSRNAMNIEGVSEKIINRLFDLGYLKSFSDLYLLENYRNEII
ELDNFGEKSFQNMIDSINRSKEKSLERLLFALGIRHVGQKTAQLLAKKFQTINAIQNATV
EMLSVINDVGPIVATSVVDYFNVPNNVEEISKLINHNVNVKYLKSDSFVVQKLENQRFVI
TGTLSKPREYFKELIENYGGHVSDSISSKTTYLLAGTDGGSKLLKAAKLNVKIISEIDFI
NLIEGGE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagcagcagcgcaaagcagaattgaagaattaaaacaatcgttagaagaatgg
aattatcaatattacgttcttgataatcctagtgtttctgatcaagaatatgaccgggca
atgcaagaattaattgctttagaacaagaatttccggctttaattacccttgattcccca
actcaacgcgtatcagggacagttagtgaaaagtttagtaaatatttccatacgagtcca
atgttaagtttagggaatgcttttaactatgaagatttagttcattttgatgaacaaatt
aaagaattaacgggcctatcagcaattgattatacttgtgaattaaaaattgatggctta
tcaatttcattagtttatcaaaatcatctattagtaatgggggcaacacgaggtgatggt
attgcgggagaagatgtgacaactaatattaaaaaaattaaatctattcctttaaaagta
gcccaacctaatttgattgttcgtggggaagtctacttatcattagaagaatttaataaa
attaatgctgagcgagcggcgaaggatgaaccactatttgctaatcctcgtaatgctgcc
gctggaacgttacggcaattagattcaacaattgtgcaaaaacgaaacttagatgccttt
ttatattattatgttaatgccattgaagatgggattccaacccagtatgaagctttaaaa
catttagagggattaaaatttaaaaccaataaagaatatcaattatgtcataacgttgat
gaagtatgaaattatattcaaaaatatcaagatttacgtcatcaattaggttatgagatt
gatggaattgtcattaaagttaatgattttaaattatataatcgaattggttataccgct
aaaaatccgaagtgagcagttgcttataagtttcccgctgaaattgttacaacaaaatta
gttgatatttttcctagtgttggacgaactggcaaaattacctataatgctgttttagaa
cctgttcgcattgctgggacaattgtgcgcgcggcaacattacataatggtgattttatt
atcaaacgcgatattcggattggtgattatgttgaattaaaaaaagcgggtgatattatt
cctgaagtaattcagccgttacttgatcgacgaccagaagagacagttaaatgaacgatg
gctaaaaaatgtcctgattgtgctaactgattagaaaaaaccgatgatgaagttgaccaa
tattgtgttaattctttatgtccaaaaaaaattacccggggattagaacatttttgttct
cgcaatgcaatgaatattgaaggtgttagtgaaaagattatcaatcgtttatttgatttg
ggatatttaaaaagctttagtgatttatatttattagaaaattatcgtaatgagattatt
gaattagataattttggtgagaaatcttttcaaaatatgattgactcaattaatcgctca
aaagaaaagtcattagaacgattgttatttgccttaggaattcgtcatgttggccaaaaa
acagcccaattattggcaaaaaaatttcaaacaattaacgcaattcaaaacgcaacagtt
gaaatgttatcagtaattaatgatgttgggccaattgttgcaactagtgtagttgactat
tttaatgtcccaaataatgttgaagaaattagcaaattaattaaccacaatgttaatgtt
aagtatttaaaaagtgatagttttgttgttcaaaaattagaaaatcagcgctttgttatt
acggggacattatcaaaaccgcgggaatattttaaagaattaattgaaaattatgggggc
catgtttctgatagtattagtagtaaaacaacttatttgttagccggaacagatgggggt
agcaaattattaaaagcagcaaaattaaatgttaaaataattagtgagatagattttatc
aacctaattgaaggaggagaatag
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