Winmispira thermophila DSM 6192: STHERM_c08170
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Entry
STHERM_c08170 CDS
T01315
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sta
Winmispira thermophila DSM 6192
Pathway
sta03030
DNA replication
sta03410
Base excision repair
sta03420
Nucleotide excision repair
sta03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STHERM_c08170
03410 Base excision repair
STHERM_c08170
03420 Nucleotide excision repair
STHERM_c08170
03430 Mismatch repair
STHERM_c08170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sta03032
]
STHERM_c08170
03400 DNA repair and recombination proteins [BR:
sta03400
]
STHERM_c08170
Enzymes [BR:
sta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STHERM_c08170
DNA replication proteins [BR:
sta03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STHERM_c08170
DNA repair and recombination proteins [BR:
sta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STHERM_c08170
NER (nucleotide excision repair)
GGR (global genome repair) factors
STHERM_c08170
MMR (mismatch excision repair)
DNA ligase
STHERM_c08170
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STHERM_c08170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
HHH
RecR_HhH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ADN01766
UniProt:
E0RRX9
LinkDB
All DBs
Position
899732..901753
Genome browser
AA seq
673 aa
AA seq
DB search
MTEQEAKKEIDRLVELLQRADYEYYVLGRPHLTDQEYDSLFDRLKTLEAQFPHLKRADSP
TQRVGSDLTVDFPEVAHTIPVLSLDKAYTETEVLSWIEKTERAAGRPLGCVIEEKIDGVS
LVLYYRGGILDRAVTRGNGRVGNDITPNARTIRQIPLRIPETGEVVVRGEVYLPLQYFDE
INARMEVPYANPRNLAGGVLRRKNSAEVARVPLHFLAYDGYLPFPVATYTESLDLLIEWG
FPVNPRHERIPAGTPDRAERIRAFIEKERTERATLDYQIDGLVFKVNELDVRDRLGYTGH
HPRWAIAYKFEAPQAVTELVRIDVQVGRTGRVTPVARLKPVELSGSTISNVTLHNEDYVQ
ALELAPGDLVAISKRGDVIPAIEKVVEKNEEGVPVWRMPEHCPECSSRLERRGAHHFCPN
RSCPAVITGRLKFFVSPKQMDIRVLGNETIDFLVEKGYIRRIPDLYTFDYRRLLDEPGFG
EKKINLIVQGIEESKRRPFSTVLVALGIPDVGPSVVETLIRGGITGIDRLLEIADRGDVD
ALTRLEGIGEKTARQLIETLRDPEWRKEIEELRKAGLSFEEERPEAVSGGPFEGQVWCVT
GSFRHFTPRSRAEELISSLGGRVVSSVSSKTTHLLVGENPGSKLEKARSLGVQLVTEDQF
IEMLKGAGVDPLG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaacaggaagccaagaaggagatcgaccgtctcgtcgagctcctccagcgtgcg
gactacgagtactacgtcctcggccgcccccacctcacggatcaggagtacgacagcctc
ttcgatcgcctcaaaactctcgaggcccaattcccgcacctcaagcgagctgactcaccc
acccagcgtgtaggttccgacctcaccgtcgacttccccgaagtcgcacacaccatcccg
gtcctgagcctcgacaaggcctacaccgagaccgaagtcctctcctggatcgagaagaca
gaacgcgccgcgggacgacccctcggatgtgtcatcgaagagaagatcgatggcgtctcc
ctcgtcctctactaccggggcgggatcctcgacagagccgtcacccgcggcaacggaagg
gtggggaacgacatcacccccaacgccaggaccatcagacagatccccctccgcatcccc
gagaccggggaggtggtcgtgcgcggtgaggtctacctccccctccagtacttcgacgag
atcaacgcccggatggaagtcccctacgccaatccacgcaacctcgcaggcggcgtcctg
cgcaggaagaacagcgccgaagtcgcccgggtacccctccacttcctggcctacgacggc
tacctccccttcccggtcgccacctacacggagagcctcgacctcctcatcgagtggggc
tttcccgtcaacccacgacacgagcgcatccccgccggcacacccgaccgggccgagcgc
atccgcgccttcatcgagaaggaacgcaccgagcgggcgaccctcgactaccagatcgac
ggcctcgtcttcaaggtgaacgagctcgacgtccgggaccgcctcgggtacactggccac
cacccccggtgggccatcgcctacaagttcgaggccccccaggccgtcaccgagcttgtg
cggatcgacgtccaggtgggacgcaccggccgtgtgaccccggtcgccaggctcaagccc
gtggagctctccggctccaccatctccaacgtcaccctccacaacgaggactacgtccag
gccctcgaactcgcgcccggcgacctcgtggccatctccaaacgcggcgacgtgatcccc
gccatcgaaaaggtggtggagaagaacgaggagggcgtaccggtctggcgcatgcccgaa
cactgccccgaatgcagctcccgtctcgaacgaaggggtgcccaccacttctgtcccaac
cggtcgtgccctgccgtgatcacgggcaggctcaagttcttcgtgagccccaagcagatg
gacatccgcgtcctggggaacgagaccatcgacttcctggtggagaaaggctacatcagg
cgtatccccgacctctacaccttcgactaccggagactgctggacgaacccggcttcgga
gagaagaagatcaacctgatcgtccagggcatagaggagagcaagcgacggcccttctcc
accgtgctcgtggccctcgggatccccgatgtgggaccgagcgtggtggagaccctcata
aggggcggcatcacgggcatcgaccggctcctggagatcgcggacagaggcgacgtcgat
gccctcacccgcctcgaaggcataggggagaagaccgcccggcagctcatagagacactg
cgggaccccgagtggcggaaggagatcgaggaactcaggaaggcgggcctctccttcgag
gaggagcgacccgaagcggtctccggcggccccttcgaaggccaggtctggtgtgtgacg
gggagcttccggcacttcacccccaggagcagggcagaggagctcatctcctccctcggc
ggcagggtggtaagcagcgtctcctccaagaccacccacctcctcgtgggcgaaaacccc
ggctccaagctggagaaggcccgttccctcggggtacagctcgtcaccgaagaccagttc
atcgagatgctcaaaggcgcgggagtggatccactcggttga
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integrated database retrieval system
