Spiroplasma tabanidicola: STABA_v1c02020
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Entry
STABA_v1c02020 CDS
T06336
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stab
Spiroplasma tabanidicola
Pathway
stab03030
DNA replication
stab03410
Base excision repair
stab03420
Nucleotide excision repair
stab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STABA_v1c02020 (ligA)
03410 Base excision repair
STABA_v1c02020 (ligA)
03420 Nucleotide excision repair
STABA_v1c02020 (ligA)
03430 Mismatch repair
STABA_v1c02020 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stab03032
]
STABA_v1c02020 (ligA)
03400 DNA repair and recombination proteins [BR:
stab03400
]
STABA_v1c02020 (ligA)
Enzymes [BR:
stab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STABA_v1c02020 (ligA)
DNA replication proteins [BR:
stab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STABA_v1c02020 (ligA)
DNA repair and recombination proteins [BR:
stab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STABA_v1c02020 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STABA_v1c02020 (ligA)
MMR (mismatch excision repair)
DNA ligase
STABA_v1c02020 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STABA_v1c02020 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
BRCT_2
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QGS51569
UniProt:
A0A6I6C814
LinkDB
All DBs
Position
226050..228047
Genome browser
AA seq
665 aa
AA seq
DB search
MNNVKEKILEIKQKLNEWGYAYYVLDDPVVDDAEYDKLFNELVKLEQEHPDLITYDSPTK
RVGGIVLDKFEKYQHKVPMLSLANAFNEKDLKNFDDQIFKEIENKNYSFFVEPKIDGLSI
SLIYSKGKLFKAVTRGDGVFGEDVTNNVKTIKSIPLVIENKDDYVEIRGEVFLSKKEFEK
INQQRQLDEEPLFANPRNAAAGTIRQLDSNIAASRNLDAYLYYYMDREKIKTHSESLNYL
KNLKFKINELGKICKNIDEVMQHINYISEQRNKLNYEIDGVVVKVNNFDLYEKVGYTSKF
PKWAIAFKFPAEIKNTRLLNIFATVGRTGKITYNANLEPVQLAGTTVQSATLHNADFIKQ
RDIRVGSIVKVKKAGDIIPEIIEPIKDETFKLLSVWKETHVCPECNSVLERVEDEVDQYC
INSSCRRKVVRLMEHFVSREAMNIEGLSIKIIEKLFENNFIYNVADIYKLKNFKEELISL
DKMGKKSVENLLEAIEKSKTNSAEKLFFGLGVRHVGKKTAQLLVTNFKDIKDFDKISFEQ
LEKVRDVGPIVARSVIDWFENKNNKKLLEDLVSLGVNTSYLGNIGSKYNEIISNKSFVIT
GTLSNSRNYFKNILEEHGAKVIDSVSKKTDYLLVGEDAGSKLEKANKLGVKIINEQEFLE
MLGEK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaataatgttaaagaaaaaattttagaaataaaacaaaaacttaacgaatgaggttat
gcctattatgttttagatgatcctgttgttgatgatgcagagtatgataagttatttaat
gaactagttaagctagaacaagagcatcctgatttaattacatatgattcaccaactaaa
agagttggaggtattgttttagataagtttgaaaaatatcagcataaagttccaatgtta
agtctcgcaaatgcatttaatgaaaaagatttaaaaaattttgatgatcaaatttttaaa
gaaatagaaaataaaaattatagtttttttgtagaaccaaaaattgatggtttatcaata
tcattaatttattcaaaaggaaaattatttaaagctgttacaagaggtgatggagtattt
ggagaagatgttaccaataatgttaaaactataaaaagcattcctttggttatcgaaaat
aaagatgactatgttgaaataagaggagaagtttttttgtcaaaaaaagagtttgaaaaa
ataaatcaacaaagacaacttgatgaagaacctttatttgcaaatcctagaaacgcagct
gccggaacaattcgacaacttgattcaaatatcgctgcttcaagaaatttagatgcatat
ctttattattatatggatagagaaaaaattaaaacacattctgaatccttaaattattta
aaaaacttaaaatttaaaattaacgagttaggaaaaatttgtaaaaacattgatgaagtt
atgcaacacatcaattatattagtgagcaacgaaacaaactaaattatgaaattgatgga
gtcgtagttaaagtaaataattttgatttatatgaaaaagttggttatacttcaaagttt
cctaagtgagccatagcattcaagtttccagcagaaattaaaaataccaggcttttaaat
atttttgcaacagtaggaagaacaggaaaaattacttacaatgctaatcttgaaccagtt
caacttgcaggaacaactgttcaatctgcaactttacataatgcagattttattaaacaa
agagatattagagttggatcaatagttaaagtaaaaaaagccggagatattattcctgaa
ataatagaaccaattaaagatgaaacttttaaattattatcagtttgaaaagaaacacat
gtttgtcctgaatgtaactcggttttagagagagtagaagatgaagttgatcaatattgt
attaatagttcttgtagaagaaaagttgttagattgatggagcactttgtttcaagagaa
gctatgaatattgaagggttgagtataaaaataatagaaaaactttttgaaaataatttt
atttataatgtagcagatatttataaattaaaaaattttaaagaagaattaattagtcta
gataaaatgggaaaaaaatctgttgaaaatcttttagaagctatagaaaaatcaaaaaca
aactctgcagaaaaattattttttggtttgggagtaagacatgttggtaaaaaaactgct
caattattagtaacaaattttaaagatataaaagactttgataaaattagttttgaacag
ctagaaaaagttcgtgatgtagggccaattgtggcaagatcggtaattgattggtttgaa
aataaaaataataaaaaacttttagaagatttagtatcacttggagtaaatacttcttat
ttaggaaacattggatctaaatataatgaaattatttcaaataaaagttttgtaattaca
ggcaccctatcaaattctagaaattatttcaaaaatattttagaagaacatggagcaaaa
gtaattgatagtgtaagtaaaaaaacagattatttactagttggtgaagatgctggaagt
aaacttgaaaaagcaaacaaacttggtgttaaaataattaatgaacaagaatttttagaa
atgttaggagaaaaataa
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