Streptomyces tabacisoli: ABII15_26975
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Entry
ABII15_26975 CDS
T11033
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stac Streptomyces tabacisoli
Pathway
stac03030
DNA replication
stac03410
Base excision repair
stac03420
Nucleotide excision repair
stac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABII15_26975 (ligA)
03410 Base excision repair
ABII15_26975 (ligA)
03420 Nucleotide excision repair
ABII15_26975 (ligA)
03430 Mismatch repair
ABII15_26975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stac03032
]
ABII15_26975 (ligA)
03400 DNA repair and recombination proteins [BR:
stac03400
]
ABII15_26975 (ligA)
Enzymes [BR:
stac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABII15_26975 (ligA)
DNA replication proteins [BR:
stac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABII15_26975 (ligA)
DNA repair and recombination proteins [BR:
stac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABII15_26975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABII15_26975 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABII15_26975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABII15_26975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
Motif
Other DBs
NCBI-ProteinID:
XCJ73382
UniProt:
A0AAU8J039
LinkDB
All DBs
Position
unmamed1:5903760..5905976
Genome browser
AA seq
738 aa
AA seq
DB search
MAAASAGKKAETESSVPATARDEHAQLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRSLEA
LEEQYSELRTPDSPTQKVAGNYATEFTSVEHRERMLSLDNAFDDLELAAWAERVHKDVGA
SGYHFLCELKIDGLAVNLTYEHGRLTRAATRGDGRVGEDITPNVRTIAEIPDRLQGERVP
DLVEIRGEVFFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLRMVVH
GIGAREGFDIARLSEAYDLLREWGLPTAKHNRVVDDLDGVRKFIAYYGENRHSVEHEIDG
AVIKLDEIPLQGRLGSTARAPRWAIAWKFPPEEVNTKLVNIRVGVGRTGRVTPYAQVEPV
TVAGSEVEFATLHNQEIVKKKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGSEYEFEMPA
ECPECGTPLRAMKEGDIDLRCPNARTCPAQLRERLFYLGGRQCLDIENFGAVAAAALTAP
LEPAEPPLTDEGDLFDLTIEQLLPIKAYVLDPDSGLPKRDPKTGEDKVVTVFANQKGEPR
KNALSMLENIAAAKDRPLARVINGLSIRHVGPVAAEALAREFRSVDRIDQATEEELAATD
GVGGIIAASVKQWFAEDWHREILRKWRDAGVRMEEEGAGEDEGPRPLEGLTVVVTGTLEN
FTRDGAKDALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQVKVPVLDEAGFAVLLDQ
GPDAAAELALPAEEPTEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctgccgcaagcgctggaaagaaggcggagaccgagagctccgtgcccgcgacggcg
cgggacgagcacgcccagctggccgagcagatcgaagagcaccgcttccggtactacgtg
aaggacgcgccggtcgtctccgacgccgagttcgacaggctgctgcgctccctcgaagcg
ctcgaggagcagtactccgagctgcgcacccccgactcgccgacccagaaggtcgcgggc
aactacgccacggagttcacgtccgtggagcaccgcgagcgcatgctctcgctcgacaac
gccttcgacgacctggagttggcggcctgggccgagcgcgtccacaaggacgtcggcgcg
tccggctatcacttcctgtgcgagctgaagatcgacggcctcgcggtcaacctgacgtac
gagcacgggcggctgacccgcgcggccacccgcggcgacggccgcgtcggcgaggacatc
acgcccaacgtccgcacgatcgccgagatccccgaccgactccagggcgagcgcgtcccg
gacctcgtcgagatccgcggtgaggtcttcttcccgatggagaagttcgaggagctgaac
gcccggctggtcgaggccggcgacaagcccttcgccaacccgcgcaacgcggcggcgggt
tcactccgccagaaggacccccgggtcaccgcgacccgcccgctgcgcatggtcgtgcac
ggcatcggcgcccgcgagggcttcgacatcgcccgcctgtcggaggcgtacgacctgctg
cgcgagtggggcctgcccaccgcgaagcacaacagagtggtcgacgacctcgacggcgta
cggaagttcatcgcgtactacggggagaaccggcactccgtcgagcacgagatcgacggc
gccgtcatcaagctcgacgagatcccgctccagggccggctcggctccaccgcgcgcgcc
ccgcgctgggccatcgcctggaagttcccgcccgaagaggtcaacaccaagctggtcaac
atccgggtcggcgtgggccgcaccggccgcgtcaccccgtacgcgcaggtcgagccggtg
acggtggcgggctccgaggtcgagttcgcgacgctgcacaaccaggagatcgtcaagaag
aagggcgtgctcatcggggacaccgtcgtcatccgtaaggccggtgacgtcatccccgag
atcctcggcccggtcgtcgacctgcgcgacggcagcgagtacgagttcgagatgcccgcc
gaatgtcccgagtgcggcaccccgctgcgggccatgaaggagggcgacatcgacctgcgg
tgtcccaacgcccgcacctgccccgcccagttgcgggagcggctgttctatctgggcggc
cggcagtgcctggacatcgagaacttcggggcggtcgccgccgccgcgctcaccgccccg
ctggagcccgccgagccgccgctgaccgacgagggcgatctgttcgacctcaccatcgag
cagctgctgcccatcaaggcgtacgtcctcgaccccgacagcggcctgcccaagcgggac
ccgaagaccggtgaggacaaggtcgtcacggtcttcgccaaccagaagggcgagccgcgg
aagaacgcgctgtcgatgctggagaacatcgcagccgccaaggaccggccgctcgcccgc
gtcatcaacggcctctccatccggcacgtgggccccgtcgcggccgaggcactggcccgc
gagttccgctccgtcgaccgcatcgaccaggccacagaggaggagctggccgccaccgat
ggcgtaggcgggatcatcgccgcctccgtgaagcagtggttcgccgaggactggcatcgg
gagattctgcggaaatggcgtgatgccggtgtgcgcatggaggaggaaggggccggtgag
gacgaggggccgcgcccgctcgaaggcctcaccgtcgtcgtcaccggcaccctggagaac
ttcacccgggacggcgcgaaggacgccctgcagagcagaggtgccaaggtgacaggttcc
gtttccaagaagacgtcctttgtcgttgtcggggacaacccgggatccaaatacgacaag
gccatgcaggtgaaggttccggttctggacgaggccggcttcgccgtgctcctcgaccaa
ggtcccgacgccgccgccgaactggcgcttcccgccgaggaaccgactgaggagtag
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