Spirosoma taeanense: HNV11_15205
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Entry
HNV11_15205 CDS
T07080
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stae
Spirosoma taeanense
Pathway
stae03030
DNA replication
stae03410
Base excision repair
stae03420
Nucleotide excision repair
stae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HNV11_15205 (ligA)
03410 Base excision repair
HNV11_15205 (ligA)
03420 Nucleotide excision repair
HNV11_15205 (ligA)
03430 Mismatch repair
HNV11_15205 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stae03032
]
HNV11_15205 (ligA)
03400 DNA repair and recombination proteins [BR:
stae03400
]
HNV11_15205 (ligA)
Enzymes [BR:
stae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HNV11_15205 (ligA)
DNA replication proteins [BR:
stae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HNV11_15205 (ligA)
DNA repair and recombination proteins [BR:
stae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HNV11_15205 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HNV11_15205 (ligA)
MMR (mismatch excision repair)
DNA ligase
HNV11_15205 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HNV11_15205 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Auto_anti-p27
BRCT_2
Nlig-Ia
Zn_ribbon_NUD
HHH
Zn_ribbon_Top1
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
QJW90634
UniProt:
A0A6M5YAT0
LinkDB
All DBs
Position
complement(3637947..3640007)
Genome browser
AA seq
686 aa
AA seq
DB search
MTPQERISELTERLNYYNHQYYQNSVSEVDDFTFDQLLQELTDLEKQYPDLRRSDSPTAR
VGGTISKEFATVYHRFPMLSLGNTYSETELVEFDNRVRKGLRDAPYEYICELKFDGVALS
LTYENGVLVQGATRGDGIRGDDITNNIRTIRTLPLRVGYNQQSHVDVPALFEVRGEGFLP
LAEFERINKEREDIGEPLLANPRNAASGTFKQQDSAIVAQRRLDCYLYSFLSEPEVFQTH
EESLIALKNWGFNVSPTWRKCADIRAVMMYINEWETKRFDLPLGTDGIVIKVNRYDQQRE
LGYTAKSPRWAIAFKYKALAASTTLNGIQYQVGRTGAVTPVAMLTPVLLAGTVVKRASLH
NANEIERLGVRLHDTVFVEKGGEIIPKITGVDLNRRTDLSEPIQYPTTCPACGTPLVRKE
GEAHFYCPNEKGCPPQRQARFEHFIQRRAMNIESLGEGKIQLLIERGLVQSPDDLYRLTN
ADLLGLEKAYADEETGKVRVVKFGQKTVDNILSAIERSKQQPFPNVLFALGIRYVGNTTA
ERLADYFGSMDALMNAPLETLANVPDVGPRIAQSVAAWFTDSDNVTFVEGLRAAGVQFAS
DRKIVEPEGEGLAGKTFLYTGTFANFSREELEAKIAANGGKLLSGISKKLNYLIVGENAG
PSKLEKAQKLNVPTISEAEFMAMLEA
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgacgccccaggaacgcatctccgaactaaccgagcggctgaattattacaaccatcag
tactaccagaacagcgtttcggaagtagacgattttactttcgatcagctgcttcaggaa
ctaaccgatttagaaaaacagtaccccgatctgcgtcggtccgattcgccaacggcccgc
gttggcggcactatcagtaaggagtttgcgacggtctatcaccgtttccccatgctgtcg
ctgggcaacacctactcggaaaccgaacttgttgagttcgacaatcgcgttcgaaaaggg
ctgcgcgacgcgccttatgaatacatctgcgaacttaaatttgacggggtagcgctcagc
ctgacttacgagaacggggtgctggtgcagggcgcaacccggggcgatggtatccggggc
gacgatattaccaataacatccgcacgatccggacgctgccgttgcgggtgggctataat
caacagtcacacgtggatgtgccggcgctgttcgaggtacggggggagggctttttgccg
ctggcggagtttgagcgtatcaacaaagagcgcgaggacatcggcgagccgctgctggcg
aacccacgtaatgccgcgtccggcacgtttaaacagcaggattcggccattgtagcccag
cgccggctcgactgctatctctactcgtttctgtcggagccggaggtgtttcaaacgcac
gaagaaagcctgattgccctgaaaaactggggcttcaacgtatcgcccacctggcgaaaa
tgtgccgacatccgggctgtaatgatgtatattaatgaatgggaaacgaaacgatttgac
ctgccgctcggcaccgatgggatcgtgattaaagtgaaccgctacgatcagcaacgtgaa
ctgggctatacggccaaaagtccgcgctgggccattgcctttaaatataaagctctggcc
gccagcacaacgctcaatggcatccagtatcaggtgggtcgtacgggtgccgttacgccc
gttgctatgctgacgccggttcttctggctggtacggtagtgaagcgggcgtcgctgcat
aacgccaacgaaatcgaacggctgggcgttaggctgcacgacaccgtattcgtcgaaaaa
ggcggagagatcatccccaagattacgggtgtggacctcaatcggcgcacagacctgagc
gaaccgattcagtatccaacaacctgcccagcctgcggaacgcccctggtccggaaagaa
ggggaggctcatttttactgccctaacgaaaaggggtgccctccgcagcggcaggcccgc
ttcgagcattttatccagcgccgggccatgaacatcgaaagcctgggtgagggtaaaatt
cagttgctcattgagcgcgggctggtgcagtcgcccgacgacctttaccgactgaccaac
gcggatttgctcggcctcgaaaaagcgtacgcggacgaagaaaccgggaaagttcgggtg
gtgaagttcgggcagaaaaccgtcgataacatcctgagcgctattgaacgctcgaaacag
cagccgtttccgaatgtgttgtttgcgctgggtattcgttacgtaggtaacacaaccgcc
gagcgactggccgattattttggctccatggatgccctgatgaacgctcccctggaaacg
ctggctaatgtgccggacgttggtccgcggattgcccagagcgtagcggcctggtttacg
gactccgataatgtgacttttgtagaagggctgcgggcggccggtgtgcagtttgccagc
gaccggaaaatcgtggaacccgaaggcgagggactggctggtaagacctttctatataca
ggtacgttcgccaattttagccgggaagaactcgaagccaagattgcggctaacgggggc
aagctcctgagcggaatttccaaaaagctcaactacctgattgtgggagaaaacgcgggt
ccgtcgaagctcgaaaaggcgcagaagctcaatgtgccaacaattagcgaggctgagttt
atggcgatgctcgaggcataa
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