Spiroplasma taiwanense: STAIW_v1c01490
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Entry
STAIW_v1c01490 CDS
T02742
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stai
Spiroplasma taiwanense
Pathway
stai03030
DNA replication
stai03410
Base excision repair
stai03420
Nucleotide excision repair
stai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STAIW_v1c01490 (ligA)
03410 Base excision repair
STAIW_v1c01490 (ligA)
03420 Nucleotide excision repair
STAIW_v1c01490 (ligA)
03430 Mismatch repair
STAIW_v1c01490 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stai03032
]
STAIW_v1c01490 (ligA)
03400 DNA repair and recombination proteins [BR:
stai03400
]
STAIW_v1c01490 (ligA)
Enzymes [BR:
stai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STAIW_v1c01490 (ligA)
DNA replication proteins [BR:
stai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STAIW_v1c01490 (ligA)
DNA repair and recombination proteins [BR:
stai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STAIW_v1c01490 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STAIW_v1c01490 (ligA)
MMR (mismatch excision repair)
DNA ligase
STAIW_v1c01490 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STAIW_v1c01490 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
TRIP4_3rd
HHH
RNA_pol_Rpb5_C
Zn_ribbon_9
Motif
Other DBs
NCBI-ProteinID:
AGR40833
UniProt:
S5MAP6
LinkDB
All DBs
Position
145155..147149
Genome browser
AA seq
664 aa
AA seq
DB search
MEKVKIEIEKLKIKLNEWGNAYYVLDKPLVEDSEYDRLLNKLKILEDQFPELITEDSPTQ
RVGGKVLDKFEKYKHKTAMLSLSNAFNKEDLLNFNDQIHKEIENLNYTFFVEPKIDGLSI
SIIYKNGILFKAVTRGDGVFGEDVTSNVKTIKSIPLIIPDKSDYFEIRGEVFLSKTEFEK
INYQRQENDENLFANPRNAAAGTLRQLDSSIAASRKLDAFLYYFMNRELYDTHEKSLEYL
KSLNFKINNLSKICKNIEDVYKHIQYIQSVRENLDYEIDGAVIKVNEFDFYEKVGYTSKY
PKWAIAFKFPAEIKITKLLDIFPTVGRTGKITYNASLEPVQLAGTTVQAATLHNADFIIQ
RDIRVNGDVKVKKAGDIIPEIIEAVKNDRFKLLRKWKESVYCPECNSILERFEQEVDQYC
INSLCSRKIVRGIEHFVSREAMNIEGLSIKIIEKLFENNFISNIADIYSLKLHKNQLINL
EKMGEKSVSNLLNAIEISKQNSLEKLFFGLGIRHVGKKTAKIISLNFKNIDNIFKLSFEE
LENIYDIGPIVAKSICDWIKIEENKFLINKLKSHNINTTYLGQEGTKNNDKITNKSFVIT
GKLSKPRNYFKDLLEEYGAKIIDTVSKKTDFLLAGEEAGSKLDKAQKLGIKIITEIEFNG
MIGE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagttaaaattgaaattgagaaactaaaaattaaattaaatgaatggggtaat
gcatattacgttttagataagcctttagttgaggattcagaatatgatagacttcttaat
aaattgaaaattcttgaagatcaatttcctgaattaattactgaagattctccaactcaa
agagttggaggaaaagtcttagataaatttgaaaaatataagcataaaacagctatgtta
agcctttcaaatgcttttaacaaagaggatttattaaattttaatgatcaaatacataaa
gaaattgaaaatttaaattatactttttttgttgaaccaaaaattgatggtttatccatt
tctataatatataagaatggaattttattcaaagcagttaccagaggcgatggagttttt
ggagaagatgttacttcgaatgttaaaaccattaaaagtattcctttaattattccagat
aagtcagattactttgaaattagaggagaagtgtttctttcaaaaactgaattcgaaaaa
attaattatcaaagacaagaaaatgatgaaaatctttttgcaaacccaagaaacgcagct
gctggaactttaaggcaattagattcctcaatagccgcttcaagaaaattagatgcattt
ttatattactttatgaatagagaactatatgatacacatgaaaaatctcttgaatattta
aagtctttaaattttaaaataaataatttgagtaaaatttgtaaaaatatcgaagatgtt
tataaacatattcaatatattcaatctgttcgtgaaaatttagattatgaaattgatgga
gcagtaataaaagttaatgaatttgatttttatgaaaaagttggttatacatcaaaatat
ccaaaatgagcgattgcatttaaatttcctgctgaaattaaaattacaaaattattagat
atttttccaacagtaggaagaacaggaaaaataacatataatgcttctttagagccggtt
caattggcaggtacaactgttcaagcagccactttacataatgcagatttcataatacaa
agagatattagagttaatggagatgtaaaagtaaaaaaagcaggagatattattcccgaa
ataattgaagcagttaaaaatgaccgatttaaattattaagaaaatgaaaagaatcagta
tattgtccagaatgtaattcaattttagaaaggtttgagcaagaagtagatcaatattgt
ataaattcgttatgttcaagaaaaatagttagaggaattgagcactttgtttcgagagag
gcaatgaatattgaaggtttaagtattaaaataattgaaaaattatttgaaaataatttt
atatcaaatatagcagatatttattctctaaaattacataaaaatcaattaattaattta
gaaaaaatgggagaaaaatctgtttctaatttattaaatgcaattgaaatttcaaaacaa
aattcgttagaaaaattattttttggcttaggaattagacatgtaggaaaaaaaactgca
aaaataatttcactaaattttaaaaatattgataatatatttaaattaagttttgaagaa
cttgaaaacatttatgatattggaccaatagtcgctaagtcaatttgtgattgaattaaa
atagaagaaaataaattcttaattaataaactaaagagccacaatattaatacaacttat
ttaggtcaagaaggaaccaaaaataatgataaaattacaaataagagttttgtaataaca
ggtaagttatcaaaaccaagaaattattttaaagatttattggaagaatatggagcaaaa
ataattgatacagtaagtaaaaaaacagattttctcttagctggagaagaagccggaagt
aaactagataaagcacaaaaattaggaataaaaataattacagaaatcgaatttaacgga
atgattggagaatag
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