KEGG   Staphylococcus sp. AntiMn-1: AOB58_75
Entry
AOB58_75          CDS       T09786                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
stap  Staphylococcus sp. AntiMn-1
Pathway
stap03030  DNA replication
stap03410  Base excision repair
stap03420  Nucleotide excision repair
stap03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:stap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AOB58_75
   03410 Base excision repair
    AOB58_75
   03420 Nucleotide excision repair
    AOB58_75
   03430 Mismatch repair
    AOB58_75
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:stap03032]
    AOB58_75
   03400 DNA repair and recombination proteins [BR:stap03400]
    AOB58_75
Enzymes [BR:stap01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AOB58_75
DNA replication proteins [BR:stap03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AOB58_75
DNA repair and recombination proteins [BR:stap03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AOB58_75
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AOB58_75
   MMR (mismatch excision repair)
    DNA ligase
     AOB58_75
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AOB58_75
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT Arnt_C zf-NADH-PPase
Other DBs
NCBI-ProteinID: ANK36877
UniProt: A0A192F084
LinkDB
Position
75153..77156
AA seq 667 aa
MADLQSRVDELHQLLNRYSFEYYVQDNPSVPDSEYDKLLHELIDIEDAHPEYRTPDSPTV
RVGGSAQSTFEKVRHNTQMLSLGNAFNEEDLRKFDQRIRERIGDVEYMCELKIDGLAVSL
KYENGRFVQGLTRGDGTTGEDITENLKTIHAIPLKIKETRTFEVRGEAYMPRQSFFNLNE
AKAKNDEQAFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTQFNANTQSEALDELD
ELGFKTNQERQRVQTIDDVIAYIEHWTEKREALPYDIDGIVIKVNMVAHQEELGFTQKSP
RWAIAYKFPAEEVITDLVDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHDK
DIRIGDSVVIKKAGDIIPEVIKSVLDRRPDNAEVYHMPTHCPSCEHELVRIEGEVALRCI
NPKCQAQLVEGMIHFVSRQAMNIDGLGTKIIQQLYDNEKIKDIADIFYLTKEDLLPLDRM
GEKKVDNLINAIEVSKNNSLEKLLFGLGIRHLGVKASQVIAEKYGTMDKLFEITEEDFVG
IHDIGHKVAQSVVTYLENEDIRALINKLKEKNVNMTYKGIKTSDLEGHPDFKDKTIVLTG
KLYQMTRNEASKWLELQGAKVTSSVTKSTDLVIAGEDAGSKLTKAEKFDTAIWSEEDFVQ
KQNEIEG
NT seq 2004 nt   +upstreamnt  +downstreamnt
gtggctgatttacaatcacgtgtcgatgaattgcatcaattgttaaatcgctatagtttt
gagtactatgttcaagataatccatcagtgccggacagtgaatatgataaattgttgcat
gagttaatagacattgaagatgctcacccagaatatcgaacgcctgactctccaacggta
agagtcggtggttctgctcaatcaactttcgaaaaggtaagacataatacccagatgctc
agcttaggcaatgcatttaatgaagaagacttaagaaaattcgatcaacgtatacgcgaa
cgtataggtgacgtagaatacatgtgtgaattgaaaatagatggcttagcagtatctttg
aaatatgaaaatggccgatttgtacaagggttaacacgtggagatggtactacaggtgag
gatattacagaaaatttaaaaacgattcatgctatccctttgaaaatcaaagaaactaga
acatttgaagttcgcggcgaagcatatatgcctagacaatcattttttaatttaaatgaa
gcaaaagctaagaatgatgaacaagcgtttgcgaatccgcgaaatgctgctgccggttca
cttagacaattagattcaaagctcgcagctaaacgtaaactaagtgtttttctatatagt
gtcaatgattttactcaatttaatgcgaatacgcaaagtgaagcgttagatgaattagat
gagttaggctttaaaacgaaccaagaacgtcaacgtgtacaaacgattgatgatgtgatt
gcatatattgaacattggactgaaaaaagagaagcattaccatatgatattgatggtatt
gtaattaaagtgaatatggtagcacatcaagaggaacttggcttcactcaaaaatcaccg
cgttgggcgattgcatataaattcccagcagaagaagtaattacagatttagtggatatt
gaattaagtataggtaggacaggtgtcgtcacacctacagctattcttgaaccagtaaaa
gttgctggaactactgtttctcgcgcttctctacataatgaagatttgattcatgacaaa
gatattagaattggcgacagtgtagtaattaaaaaagcaggggatattatacctgaagtt
attaaaagtgtattagatagacgtccagataatgcggaagtttatcatatgccaacacat
tgtccaagttgtgaacatgaattagtacgcatagaaggcgaagtagctttgcgttgtatc
aatcctaagtgccaagcacaacttgtggaaggcatgattcattttgtttctcgacaagca
atgaatatcgacggtttaggtacaaaaatcattcaacaactgtatgataatgaaaaaata
aaagacattgcagatattttctacttaacaaaagaagatttattaccgcttgaccgcatg
ggagagaaaaaagtagataacttgattaatgctattgaagtgtctaaaaacaattcttta
gaaaagctattgtttggtttaggtatcagacatcttggcgtaaaagcaagccaagtcata
gctgaaaaatacggcacaatggataaattattcgaaataacagaagaagactttgttggt
atacatgacatcgggcacaaagtagcccaatctgtagtcacgtatttagaaaatgaagat
attcgtgcacttattaataaattaaaagaaaaaaatgttaatatgacatataaaggtata
aagacaagtgatttagaaggccacccagactttaaagataagacaattgtacttactggt
aagttatatcaaatgactagaaacgaagcttcaaaatggttagaacttcaaggtgcaaaa
gttacgagcagtgtaactaaaagtacagacttagttatcgctggtgaggatgcaggctcc
aaattaacaaaagctgaaaaatttgatacagcaatatggtcagaagaagactttgttcag
aagcaaaatgaaatcgagggatag

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