Starkeya sp. ORNL1: G3545_23950
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Entry
G3545_23950 CDS
T06785
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
star
Starkeya sp. ORNL1
Pathway
star03030
DNA replication
star03410
Base excision repair
star03420
Nucleotide excision repair
star03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
star00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G3545_23950 (ligA)
03410 Base excision repair
G3545_23950 (ligA)
03420 Nucleotide excision repair
G3545_23950 (ligA)
03430 Mismatch repair
G3545_23950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
star03032
]
G3545_23950 (ligA)
03400 DNA repair and recombination proteins [BR:
star03400
]
G3545_23950 (ligA)
Enzymes [BR:
star01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G3545_23950 (ligA)
DNA replication proteins [BR:
star03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G3545_23950 (ligA)
DNA repair and recombination proteins [BR:
star03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G3545_23950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G3545_23950 (ligA)
MMR (mismatch excision repair)
DNA ligase
G3545_23950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G3545_23950 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
5_3_exonuc
Bep_C_terminal
DUF6981
Motif
Other DBs
NCBI-ProteinID:
QJP16416
LinkDB
All DBs
Position
5079886..5082057
Genome browser
AA seq
723 aa
AA seq
DB search
MATDTARTTEIDVAALTADEAAKEHARLGEEIAGHDKRYYQDDAPTVSDAEYDALRRRYE
AIEDAFPELKGMDSLSEKVGAAPSSKFAKIRHAVPMLSLGNAFAAEEVEEFVARIRRFLG
LATDAEVAMTAEPKIDGLSCSLRYEEGRLIVAATRGDGFEGEDVTQNVRTISEVPQHLKA
KDVPAVFEVRGEVYMGHTDFAAINERQKEAGKPLFANPRNAAAGSLRQLDPKITASRPLR
FFAYAWGEVSEGGLPADTQSGVITAFNRWGLPTNPLTVVCRTAEELLAHYHSIEEQRASL
GYDIDGVVYKVDSLALQRRLGFVSRSPRWALAHKFPAQRAITQLERIEIQVGRTGALTPV
AKLTPITVGGVVVSNASLHNEDYIKGIGGGGEPIRGGIDIREGDWVTIQRAGDVIPQVVG
VELERRPADAKPYEFPTLCPVCHSHAVREDGEVVRRCTGGLICAAQAVERIRHFVSRDAF
DIEGLGEKQVQAFYEWGLVKQPADIFTLAARDADPAALTRLKNRDGWGETSARNLFAAIE
VRRQVPVNRFLYALGIRHVGETNAKRLLRHYGTIEALREAALNAVPPGEEHPKGNEAWAE
MVATEGIGAVVAEAVVDFFAEPNNEAAVDALLKEVTPEPLEVVAASGAVAGKTVVFTGAL
EKMTRDEAKAMAERLGAKVAGSVSKKTDYVVAGADAGSKLAKARELGVAVLSEDEWLELA
GAG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggccacggacaccgcacgcaccaccgagatcgatgtcgccgccctcaccgccgacgag
gcggcgaaggagcatgcaaggctgggcgaggagatcgccgggcacgacaagcgctattac
caggacgacgcgccgaccgtctccgacgccgaatatgacgcgttgcgccggcgctatgag
gcgatcgaggatgccttcccggaactgaagggaatggacagcctctccgagaaggtcggc
gccgcgccgtcctcgaagtttgccaagatccgccacgcggtgccgatgctctcgctcggc
aatgccttcgccgccgaggaggtggaagagttcgtcgcccgtatccggcgcttccttggg
ctcgcgacggatgccgaggtcgcgatgaccgcggagccgaagatcgacgggctgtcctgc
tcgctgcgctatgaggagggccggctcattgtcgcggcgacccgcggcgacggcttcgag
ggcgaggacgtcacgcagaatgtgcgcaccatttccgaggtgccgcagcatctgaaggcg
aaggacgtgccggcggtgttcgaggtgcgcggcgaggtctatatgggccacaccgatttc
gccgcgatcaatgagcgccagaaagaggccggcaagccgctgtttgccaatccgcgcaat
gcggcggcggggagcctgcgccagctcgacccaaagatcaccgccagccggccgctgcgc
ttcttcgcctatgcctggggcgaggtgagcgagggcggccttccggcggacacgcagtcc
ggtgtcatcaccgccttcaatcgctggggcctgccgaccaatccgctaaccgtggtctgc
cgcaccgccgaagaactgctggcgcactaccacagcatcgaggagcagcgcgccagcctc
ggctacgacattgacggcgtggtctacaaggtcgacagcctcgcgctgcagcgccgcctc
ggcttcgtctcgcgctcgccgcgctgggcgctggcgcacaaattcccggcacagcgggcg
atcacccaattggagcgcatcgagatccaggtggggcgcaccggcgcactcaccccggtc
gccaagctgaccccgatcacggtgggcggcgtggtggtgtcgaacgcctcgctgcacaat
gaggactacatcaagggcattggcggtggcggcgagccgatccgcggcgggatcgacata
cgcgagggcgactgggtgacgatccagcgcgccggcgatgtcatcccgcaagtggtcggt
gtcgagctcgagcgccggccggcggatgcgaagccttacgaattccccaccctctgcccg
gtctgccacagccatgcggtgcgcgaggatggcgaggtggtgcggcgctgcaccggcggg
ctgatctgcgcggcgcaggcggtggagcgcatccgccatttcgtctcgcgcgacgccttc
gacatcgaggggctcggcgagaaacaggtgcaggcgttctatgagtgggggctggtgaag
cagccggccgacatcttcacgctggccgcccgcgatgccgacccggcagcgctgacccgg
ctgaagaatcgcgacggctggggcgagacctcggcgcgcaatttgttcgctgccatcgag
gtgcggcggcaggtgccggtgaaccgcttcctgtatgcgctcggcatccgccatgtcggc
gagaccaatgccaagcggctgctgcgccattatgggaccatcgaggcgctgcgcgaggcg
gcgctcaatgcggtgccgccgggcgaggagcatccgaaaggcaacgaggcctgggccgag
atggtcgccaccgagggcatcggcgcggtggtggccgaggcggtggtcgatttcttcgcc
gagccgaacaacgaggcggcggtcgacgcactcttgaaggaagtgacgccggagccgctg
gaagtggtggccgccagtggcgcggtcgccggcaagaccgtggtgttcaccggcgcgctg
gaaaagatgacccgcgacgaggcgaaagcgatggcggaacgcctcggcgccaaggtcgcc
ggctcggtgtcgaagaagacggattatgtggtggccggcgccgatgccggctccaagctt
gccaaggcccgcgaactcggcgtcgcggtgctgagcgaggatgagtggctggaactggcg
ggggccggttaa
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