Spongiibacter taiwanensis: NCG89_16775
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Entry
NCG89_16775 CDS
T08367
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
staw
Spongiibacter taiwanensis
Pathway
staw03030
DNA replication
staw03410
Base excision repair
staw03420
Nucleotide excision repair
staw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
staw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCG89_16775 (ligA)
03410 Base excision repair
NCG89_16775 (ligA)
03420 Nucleotide excision repair
NCG89_16775 (ligA)
03430 Mismatch repair
NCG89_16775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
staw03032
]
NCG89_16775 (ligA)
03400 DNA repair and recombination proteins [BR:
staw03400
]
NCG89_16775 (ligA)
Enzymes [BR:
staw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCG89_16775 (ligA)
DNA replication proteins [BR:
staw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCG89_16775 (ligA)
DNA repair and recombination proteins [BR:
staw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCG89_16775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCG89_16775 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCG89_16775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCG89_16775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
USA43177
LinkDB
All DBs
Position
3695267..3697297
Genome browser
AA seq
676 aa
AA seq
DB search
MTNSTSPDQRAAELRDQLHLYSHQYYVLDQPLVPDAEYDRLFRELQAIEAEHPELRSPDS
PTQRVGGEPLSAFKTVRHEIPMLSLDNAFSEDELRDFDRRVRSRLADEQSFHYACEPKLD
GIAASLLYVDGILVRGATRGDGQQGEDITENVRTVASVPLKLRGAGWPDELEVRGEIYLP
RAGFEKINASAREAGNKLFVNPRNAAAGSLRQLDSRITASRPLEMCCYSIALRDDQQELV
ASHSEALEKLAQWGFLVSPLLKVVDDIDGCLAYYRDLLQQRDGLPYDIDGIVFKVDELAV
QQTLGFVSRAPRWAIAHKFPAQEEMTTLKDVEFQVGRTGAVTPVAKLEPVFVGGVTVSNA
TLHNFDEIQRLGVMIGDQIIIRRAGDVIPQVVQVVEGKRPADARPILVPENCPVCDSPLE
KPPGEAVLRCTGGLICGAQRREGIKHFASRKAMDIDGLGDKLVDQLVEAGLIETVADLFR
LEASQLAELERMGQKSAENLVAALEKSKQTTLPRFLFALGIREVGEATARNLALHFTTLA
ALKSASEEALLAVTDVGPIVASHIHAFFAVAHNQEVIDALLAAGVHWPEIAQNVSAQPLA
GQTWVLTGNLDRMTRSEAKEKLQALGAKVAGSVSAKTDCVAAGAAAGSKLKKAEELGVKV
IDEEGLIAVLKQGGQL
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgacaaattcaacctcgccggatcagcgcgcagcggagctgcgcgatcagctgcatctc
tacagtcatcaatattacgttcttgaccagccgctggtgcccgacgccgaatacgatcga
ctgtttcgcgaattacaggcgattgaggcggagcatcccgagctgcgctcgccggattca
ccgacccagcgcgtggggggtgaaccgctgtcggctttcaaaaccgtccgtcacgaaatt
cccatgctgtcgctggacaatgccttctctgaagatgagctgcgggactttgatcgccgc
gtgcgcagtcgtcttgctgatgagcagtccttccattatgcctgcgagccaaagctggac
ggtatcgccgccagcctgttgtatgtcgatggcatcctggtgcggggggcaactcgcggc
gatgggcagcagggtgaagacattaccgagaacgtgcgcactgtcgcgtcggtgccactg
aaattacgcggtgctggctggccggatgagctggaagtgcgtggcgagatttatttgccc
cgggcgggctttgaaaaaattaacgccagtgcgagggaggcgggcaacaagctttttgtt
aacccgcgtaatgccgccgccggcagtctccggcagcttgatagccgcatcaccgccagc
cgcccattggagatgtgctgttacagcattgcactgcgcgacgatcaacaggagttggtg
gccagccacagcgaggccctggaaaagctggcccagtggggctttttggtgagtccctta
ttgaaagtggtagacgatatcgatggctgtttagcctactaccgcgatctgctccagcag
cgggacggcttgccttacgatattgacgggattgtattcaaggttgatgagctggcagtg
cagcaaacattgggctttgtctccagggcgccccgttgggcgatagcgcataaatttccc
gcccaggaggaaatgaccacgctcaaggatgtggagtttcaggtagggcgcaccggcgcc
gtgaccccggtggcgaaactggagccggtctttgtgggcggggttacggtgagcaacgcc
acgctgcacaattttgacgagattcagcggcttggcgtgatgatcggcgatcagatcatt
atccgccgagccggcgatgtgattccccaggtggtgcaggtagtggaaggcaaacgtccc
gccgatgcccgcccaattctcgtgccggaaaactgtccggtgtgtgacagcccccttgag
aaaccgccgggagaggcggtgctgcgctgcactggtggcctgatctgtggtgcccagcgc
cgcgaggggatcaagcattttgcctctcgcaaagccatggacatagacggcctgggcgac
aagctggttgatcagctggtagaagccggtttgattgagacggtcgctgatttattccgt
ctcgaggcgagccagttagccgagctggagcgaatgggccagaaatcagcggaaaatctg
gtggcggcgctggaaaagtccaagcaaaccacgctgccacggtttctcttcgccctcgga
attcgggaagtgggggaggccacagcgcgaaacctcgccctgcatttcaccaccttggcg
gcgctgaaatcggcaagcgaagaagcgttgctggcagtcaccgatgtgggccccattgtg
gcaagccacattcatgccttttttgcagtggcgcacaatcaggaggtgattgatgcactg
ctggctgccggggttcattggcccgaaattgctcagaatgtgagcgcccagccccttgcc
gggcagacttgggtgctgaccggtaacctggatcgtatgacccgcagtgaggccaaggaa
aaactgcaggccctgggggcaaaggtggctggtagcgtttcggcaaaaactgattgcgtg
gctgccggtgctgcggcaggctccaagctgaaaaaagcggaagagctgggtgtgaaggtg
attgatgaggaaggtttgatcgccgtgctgaagcagggcggacaattgtga
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integrated database retrieval system
