Streptococcus pasteurianus: SGPB_0646
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Entry
SGPB_0646 CDS
T01524
Symbol
ligA
Name
(GenBank) NAD+-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stb
Streptococcus pasteurianus
Pathway
stb03030
DNA replication
stb03410
Base excision repair
stb03420
Nucleotide excision repair
stb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SGPB_0646 (ligA)
03410 Base excision repair
SGPB_0646 (ligA)
03420 Nucleotide excision repair
SGPB_0646 (ligA)
03430 Mismatch repair
SGPB_0646 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stb03032
]
SGPB_0646 (ligA)
03400 DNA repair and recombination proteins [BR:
stb03400
]
SGPB_0646 (ligA)
Enzymes [BR:
stb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SGPB_0646 (ligA)
DNA replication proteins [BR:
stb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SGPB_0646 (ligA)
DNA repair and recombination proteins [BR:
stb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SGPB_0646 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SGPB_0646 (ligA)
MMR (mismatch excision repair)
DNA ligase
SGPB_0646 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SGPB_0646 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RTT107_BRCT_5
RNA_ligase
RNA_lig_T4_1
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BAK29742
UniProt:
F5X5Q2
LinkDB
All DBs
Position
673902..675860
Genome browser
AA seq
652 aa
AA seq
DB search
MKKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELILPNSPTQEVG
GLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVKAEFPNASYMAELKIDGLSISLVYV
DGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQPLNITVRGEAYLPKTSFDKINEERR
DSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTSMITQNDVLEELSRYGFS
VNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTTVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLHVVDSKRGKQVPMPIPENCPSCGSELIHYEDEVALRCINPLCPS
QIQERLTHFASRDAMNITGLGPSIVKKLFKAELVHDVADIYQLTVEDLLSLDGFKEKSAE
KLYNAIQVSKENSADKLLFGLGIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGT
VIANSLRSYFAKEEATELLHELENAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNE
AKEKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacgtattcaagaattggttgatgagctcaaccagtaccgaaaagagtattac
acagaggaccaaccaacggtctcagatagcgaatatgacaagctttatcgcgagttagtc
gagcttgaaaaagctcatccagagttgattttgccaaatagtccaacgcaagaagtgggt
gggcttgttttagatggttttgaaaaatatcagcatgaaacgccgctttatagcttgcaa
gatgctttttcacgtgaggaattagaggattttgaccgtcgtgtgaaagctgaatttccc
aatgcctcttacatggcagagctgaaaattgatggtttgtcaatttcactagtttatgtt
gatggtgtgttgcaagtcggtgccactcgtggtgacggctcagttggtgaaaatatcact
gaaaatgtcaaacgtatcaaggacattcctcataagttggcacagccacttaacattaca
gttcgtggtgaagcttatttgccaaagacgtcatttgataaaatcaatgaggaacgtcgt
gatagtggtcagacagaatttgcgaatccgagaaatgcggctgcagggacattacgtcag
ttaaatacagtagttgttgctaagcgaaatttggcaacatttctttatcaagaagtggca
tcaactagcatgataacgcaaaatgatgttttggaagaattgtctcgctatggtttttcg
gttaatccgcgacgtatcacgacatcttcaatggcagacatctggaaatttattcaagaa
gtagccgctgagcgtgataatttaccatacgatattgacggtattgttattaaggtcaat
agtcttgctatgcaagaagaacttggttttacggttaaggcgccccgttgggcaattgct
tataaatttccagctgaggaaaaagaagcagaaattctttcggttgattggactgttgga
cgtactggggtggtgacaccaaccgctaatcttagccctgttcagttagcaggaacaacg
gttagccgtgcgactttgcataatgtggattacattgctgaaaaagatattcgcattggc
gatacggtcatcgtctataaggcgggagatattattccagcagtgctacatgttgttgat
agcaaacgtggtaagcaagtaccaatgccgattcctgaaaactgtccgtcttgtggtagt
gagctgattcattatgaagatgaagtggctttacgttgtatcaatccgctttgcccaagt
caaattcaagaacgtttaacgcattttgctagccgtgatgccatgaatatcacaggttta
ggaccttctatcgttaagaaacttttcaaagcagaattggttcatgatgtcgcagacatt
taccaattaacggtggaagatttgctaagcttggatggctttaaggaaaaatctgctgag
aaactttacaatgccattcaggtttctaaggaaaattcagctgataaattgctttttgga
ctgggaattcgtcatgtcggtgccaaggctagtcgtcaattgttggaagtttttgaaacg
attgatcagttggttgctgcggatgctgacagcattgctagtatcgacggtttgggaaca
gttattgctaactcattgcgtagctattttgccaaagaagaagcgacagagctcttgcat
gaattggaaaatgcaggtgtcaactttgcttatcttggtaagaaagtttcaaaagatgct
caattagcaggtttaacagttgttttgactggaaaattggaacgtttaacgcgaaacgaa
gcaaaagaaaaactgcaagatttaggagcaaaagtgaccaacagcgtgtccaaaaaaacg
gacattgttgtcgcaggtacagatgcaggttcaaaattgaccaaagcccaagctttagga
attgatgtccgcgatgaagcttggttagaaagtttataa
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