Streptomyces sp. BRB040: ABDE16_10905
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Entry
ABDE16_10905 CDS
T11010
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stbr Streptomyces sp. BRB040
Pathway
stbr03030
DNA replication
stbr03410
Base excision repair
stbr03420
Nucleotide excision repair
stbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABDE16_10905 (ligA)
03410 Base excision repair
ABDE16_10905 (ligA)
03420 Nucleotide excision repair
ABDE16_10905 (ligA)
03430 Mismatch repair
ABDE16_10905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stbr03032
]
ABDE16_10905 (ligA)
03400 DNA repair and recombination proteins [BR:
stbr03400
]
ABDE16_10905 (ligA)
Enzymes [BR:
stbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABDE16_10905 (ligA)
DNA replication proteins [BR:
stbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABDE16_10905 (ligA)
DNA repair and recombination proteins [BR:
stbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABDE16_10905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABDE16_10905 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABDE16_10905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABDE16_10905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
Motif
Other DBs
NCBI-ProteinID:
XAR10288
UniProt:
A0AAU6XFA6
LinkDB
All DBs
Position
complement(2505739..2507946)
Genome browser
AA seq
735 aa
AA seq
DB search
MAGDKQGDEQAETTSVPAEARERHMRLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRTLEE
LEERHPELRTPESPTQKVAGAYATEFTAVQHPTRMLSLDNTFNDDELAAWFDRIAKELGE
QEYHFLCELKVDGLAVNLTYEHGRLVRAATRGDGRTGEDITPNVRTIAEIPERLAGDKVP
DRVEIRGEVYFPMEKFQELNARLNEAGDKPFANARNAAAGSLRQKDPRVTASRPLHMVVH
GIGTLEGYSGLTRLSQAYDLLKTWGLPTSPHNRVVDGLDGVREFIAYYGENRHSVAHEID
GVVVKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEP
VTVAGSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP
AECPECGTPLKAMKEGDIDLRCPNARACPAQLRERVAYLAGRECLDIEHFGGVVAAALTG
PLEPSEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPETGEEKTAMVFANKAGEP
KKNTLALLKHIEDAKARPLARFINGLSIRYVGPVAAQALAREFRSVDRIEQATEEELAST
DGVGGTIATAVKEWFAVDWHREIVRKWKAAGVPLEDHSTGEDEGPRPLEGLTVVVTGTLE
NFTRDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEEGFAVLLE
QGAEAAEAVALSAEE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcagggcgacgagcaggcggagacgaccagcgtgcccgccgaggcg
cgggagcggcacatgcggctcgccgagcagatcgaggagcaccgcttccggtactacgtg
aacgacgcgcccgtcgtcagcgacgcggagttcgaccggctgctgcgcaccctggaggag
ctggaggagcggcacccggagctgcgcacccccgagtccccgacccagaaggtcgccggt
gcctacgcgaccgagttcacggccgtccagcaccccacgcggatgctctccctggacaac
acgttcaacgacgacgagctggccgcctggttcgaccgcatcgcgaaggagctgggcgag
caggagtaccacttcctgtgcgagctgaaggtcgacggactcgccgtcaacctcacctac
gagcacgggcgcctggtccgcgccgccacccgcggcgacggccgcaccggcgaggacatc
acccccaacgtccgcaccatcgccgagatccccgagcgcctggcgggcgacaaggtcccc
gaccgcgtggagatccgcggcgaggtgtacttcccgatggagaagttccaggaactcaac
gcccggttgaacgaggcgggggacaagcccttcgccaacgcgcgcaacgcggcggccggt
tcgctgcgccagaaggacccgcgcgtcaccgcctcccgcccgctgcacatggtcgtccac
ggcatcggcaccctggagggctactcgggcctgacccgcctctcccaggcgtacgacctg
ctgaagacctggggactgccgacgtccccgcacaaccgggtggtcgacggcctggacggc
gtacgggagttcatcgcgtactacggcgagaaccggcactccgtcgcgcacgagatcgac
ggcgtcgtcgtcaagctcgacgagatccgcctccagggccggctcggctccaccgcccgc
gcgccccgctgggccatcgcctacaagtacgcgccggaggaggtcaacaccaagctggtc
gacatcaaggtgggcgtcggccgcaccggccgcgtcacgccgtacgcgcaggtcgagccg
gtcaccgtggccggcagcgaggtggagttcgccacgctgcacaaccaggaggtcgtcaag
gccaagggcgtgctcatcggcgacaccgtggtgctccgcaaggccggtgacgtgatcccc
gagatcctcgggccggtcgccgacctgagggacggcagcgagcgggagttcgtgatgccg
gccgagtgccccgagtgcgggacgccgctgaaggccatgaaggagggtgacatcgacctc
cgctgtcccaacgcccgtgcctgcccggcccagttgcgcgagcgggtcgcctacctcgcc
ggccgggagtgcctggacatcgagcacttcggcggggtcgtggccgccgcgctgaccggg
ccgctggagccgtccgagccgccgctggtggacgagggcgacctcttcgacctcaccgtc
gagaagctcctgcccatcaaggcgtacgtcctcgacccggacagcgggctgcccaagcgc
gacccggagaccggcgaggagaagaccgccatggtcttcgccaacaaggcgggcgagccg
aagaagaacaccctcgcgctgctgaagcacatcgaggacgccaaggcccgcccgctggcc
cggttcatcaacggcctctccatcaggtacgtcggaccggtcgccgcccaggcgctggcg
cgggagttccgctccgtcgaccgcatcgaacaggccaccgaggaggagctggcgagcacg
gacggcgtgggcggcaccatcgccaccgccgtcaaggagtggttcgccgtggactggcac
cgcgagatcgtccgcaagtggaaagcggccggggttccgctggaggaccactcgacgggg
gaggacgaggggccgcgcccgctcgagggactcaccgtcgtcgtcaccggcaccctggag
aacttcacccgggacggtgccaaggaggcactccagagcaggggcgccaaggtgaccggt
tcggtgtccaaaaagacctcgttcgtcgtggtcggtgacaaccccgggtcgaagtacgac
aaggcgatgcagctgaaagtgccggttctgaacgaggagggtttcgccgttctgctcgaa
caaggagccgaagcggcggaggctgtcgcgctttcggctgaggaatag
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integrated database retrieval system
