Streptococcus thermophilus CNRZ1066: str1554
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Entry
str1554 CDS
T00212
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stc
Streptococcus thermophilus CNRZ1066
Pathway
stc03030
DNA replication
stc03410
Base excision repair
stc03420
Nucleotide excision repair
stc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
str1554 (ligA)
03410 Base excision repair
str1554 (ligA)
03420 Nucleotide excision repair
str1554 (ligA)
03430 Mismatch repair
str1554 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stc03032
]
str1554 (ligA)
03400 DNA repair and recombination proteins [BR:
stc03400
]
str1554 (ligA)
Enzymes [BR:
stc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
str1554 (ligA)
DNA replication proteins [BR:
stc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
str1554 (ligA)
DNA repair and recombination proteins [BR:
stc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
str1554 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
str1554 (ligA)
MMR (mismatch excision repair)
DNA ligase
str1554 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
str1554 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
E1-E2_ATPase
HNOB
Motif
Other DBs
NCBI-ProteinID:
AAV63084
UniProt:
Q5LYL9
LinkDB
All DBs
Position
complement(1378429..1380387)
Genome browser
AA seq
652 aa
AA seq
DB search
MEKRMKELVDKLNQYAKEYYTEDNPSVSDAEYDKLYRELVTLEAEHPELVQADSPTHRVG
GLVLDGFEKYQHEYPLYSLQDAFSREELDAFDKRVKSEFPNADYMAELKIDGLSISLTYV
DGILQVGATRGDGSVGENITENVKRISDIPLKLDQPLNITVRGECYLPRAEFERINTQRQ
ENGEAEFANPRNAAAGTLRQLDTKVVAERRLATFFYQEASPTERLTQNDVLNEVAELGFS
VNPRRIVTSSMDEIWDFIQAVGQDRDHLAYDIDGVVIKVNSLAIQEELGFTVKAPRWAIA
YKFPAEEKEAKLLSVDWQVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYITEKDIRIG
DTVIVYKAGDIIPAVLRVVESKRTTQEAMPVPSQCPSCGSGLLHFEDEVALRCINPSCPA
QIKEGLIHFASRDAMNISGMGPSVVEKLFKAELVKEVADIYGLNSQDFLQLEGFKEKSAE
KLYAAIQASKENSAEKLLYGLGIRHVGAKVSKQLLESFGTIKELASADVQAIAAVDGLGE
VIAKSIQRYFAKEEAQVLLKELESYGVNLSYLGQKVADDAILSGKTVVLTGKLEHLKRSE
AKAKLEALGAKVTGSVSKKTDLVVAGSDAGSKLEKAQSLGIEVKDEAWLLDL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgaatgaaagagctggttgacaaacttaaccagtatgcaaaagagtattat
accgaggataatccatcggtgtcagatgccgagtatgataagctctatcgtgagttagta
actttagaggctgaacacccagaacttgttcaggcggatagccctacgcaccgtgtgggt
ggcctggttcttgatggttttgagaaataccaacatgagtatccgctttatagtttgcag
gatgctttttcacgagaagagctagatgcctttgataagagggtcaagtccgaatttcct
aacgctgactatatggccgagctcaaaattgatggcctttcaatttctctaacctatgtg
gatggtattcttcaagtaggtgcaacgcgaggtgatggttctgttggtgaaaatatcact
gaaaatgttaagcgaatctcagatattcctctgaagttggatcaaccgcttaatatcacc
gttcggggtgagtgttatttgccacgagctgagtttgaacgcatcaatacccagcgccag
gagaatggtgaggccgaatttgccaatccacgtaatgctgcagcaggaactcttcgtcaa
ttagatacgaaagtagttgctgagcgtcgtttggccaccttcttttatcaagaagctagt
cccactgagcgcctgacacaaaatgatgtcttgaatgaagtggcagaacttggcttctcc
gttaatccacgccgtattgtgacatcatcgatggatgagatttgggactttattcaagct
gttgggcaagatcgtgatcacttggcttatgatattgatggagttgttatcaaggtcaat
agtttggccatacaggaagagcttggctttacagttaaggcaccacgttgggccattgcc
tataaattcccagctgaggaaaaggaagcaaaacttctctcagttgattggcaggtgggt
cgtacaggtgtagtaacgccgacggctaatttgaccccagtacaattggccgggacaaca
gttagccgagctaccctacacaatgtagattatattacggagaaagacattcgtattggt
gataccgttattgtttataaggctggtgatattatccctgctgttcttcgtgtggtagaa
agtaagcgtacaacacaagaagcgatgccagttccgagtcaatgtccatcttgtggtagt
ggtctcttacattttgaagatgaagtggccctacgttgtatcaatccatcttgtcctgct
cagattaaggaaggtcttattcattttgcttctcgtgatgccatgaacatctcaggtatg
ggaccttcagtggttgaaaaactctttaaagctgaattggttaaagaggtggctgatatc
tatggtttaaatagtcaggatttcctccaattagaaggtttcaaggaaaaatcagctgaa
aaactatatgcagctattcaagcatcaaaagaaaattctgcagagaaactgctctatggt
ttgggaattcgccatgttggtgccaaagttagtaagcaattgctagaatcttttggaact
atcaaggagttggcaagtgcagatgtccaagctattgctgctgtagatggtttgggagag
gttatcgccaagtcaatccagcgttattttgccaaggaggaggctcaagttcttctgaaa
gaactggaatcctatggcgttaatttatcctatcttggtcaaaaagtagcagatgatgcc
attctatctggtaagactgttgttttgacagggaaattggagcatcttaaacgtagtgaa
gcgaaggcaaaactagaggccctgggtgctaaggtgacgggttcagtctctaagaaaaca
gatttagtggttgctggtagtgatgccggaagtaagttggaaaaagcacaaagcctagga
attgaagtaaaagatgaggcttggttgctggatttatag
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