Sporolactobacillus terrae: C0679_12905
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Entry
C0679_12905 CDS
T05792
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stea
Sporolactobacillus terrae
Pathway
stea03030
DNA replication
stea03410
Base excision repair
stea03420
Nucleotide excision repair
stea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C0679_12905 (ligA)
03410 Base excision repair
C0679_12905 (ligA)
03420 Nucleotide excision repair
C0679_12905 (ligA)
03430 Mismatch repair
C0679_12905 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stea03032
]
C0679_12905 (ligA)
03400 DNA repair and recombination proteins [BR:
stea03400
]
C0679_12905 (ligA)
Enzymes [BR:
stea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
C0679_12905 (ligA)
DNA replication proteins [BR:
stea03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
C0679_12905 (ligA)
DNA repair and recombination proteins [BR:
stea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
C0679_12905 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C0679_12905 (ligA)
MMR (mismatch excision repair)
DNA ligase
C0679_12905 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C0679_12905 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Zn_ribbon_NUD
RNA_pol_A_CTD
HHH
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
QAA26395
LinkDB
All DBs
Position
complement(2675908..2677911)
Genome browser
AA seq
667 aa
AA seq
DB search
MEESLPQHVLDLHRQLNQYSYEYYVEDNPSVPDSEYDRLMNELIALEKAHPEWITPDSPT
QRVGGEPLKAFRKVTHDVPMLSLGDVFSEEELLDFDRRVRQAVGDDIDYVCELKIDGLAI
SLTYEKGVFVLGATRGNGTVGEDITNNLKTVRSLPLVLPEPIDIEVRGEAYMPKRSFERL
NEERSRNGELLFANPRNAAAGSLRQLDPKIAAKRRLAVFLYSSGRFDRESITTHFGLLES
IRELGLPVNPESRRCKTMQEVFDYIKEYTEKRDALPYGIDGIVVKVDSMAQQRQLGNTVK
SPRWMIAYKFPAEEVVTTLEAIEVSVGRTGAVTPTAVLTPVAVAGTTVKRASLHNEDLIQ
EKDLRLGDRVVIRKAGDIIPEVVNVLTEQRTGKEIPYAMPTHCPECGSKLVHLEGEVALR
CINPKCPALIREGLIHFVSRAAMNIDGLGEKVIRQLFEKKLISDVADLYQLKREDLLSME
RMGEKSTDNLLQAIERSKENSLEHLLFGLGIRHIGAKAARILAQSFKDIDHLAAADAEAL
LSVDEIGTKMADSLTTYFAQPEAQALIGELKSAGVTMTYLGPDPEEAAQSDSPFNGKTVV
LTGKLTQMTRQEAKQAIEARGGNVTGSVSKSTDLVVAGEAAGSKLKKAQELQIEVWDEAR
FAETLKE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatcattgccgcagcatgtccttgacctgcatcgacaattaaatcaatacagt
tatgagtactacgtcgaagataatccgagcgtgccggacagtgagtatgatcggctgatg
aacgagctgattgcgctggaaaaagcgcacccggaatggatcacaccggattcgccaacg
caacgtgtcggcggtgagccgcttaaggcgttcagaaaagtgacccatgatgttccaatg
ctcagtcttggcgatgtattcagcgaagaggaactgctcgattttgatcgccgcgtacgt
caagccgttggcgatgatatcgactacgtctgtgagttgaaaattgacggacttgcgatt
tcgctgacttatgaaaaaggcgtttttgtccttggcgcaacgcgcgggaacggaacggtc
ggcgaagatattacgaataacttaaaaaccgtgcgttcgcttccgctcgttctgcccgag
ccgattgatattgaagtgcgcggcgaagcgtatatgccgaaacgctcgtttgaacggttg
aacgaggagcgcagccggaatggagagctcttgttcgccaatccgcgcaatgctgctgcc
ggctcgcttcggcagcttgatccgaaaattgcagcaaaacggcggcttgccgttttccta
tacagctccggtcgctttgatcgtgaaagcattacgacgcatttcggtctgctcgaatcg
attcgtgagcttgggcttccggtcaatccagaatcaagacgttgcaaaacgatgcaggaa
gtctttgattatatcaaggaatatacggaaaagcgtgacgcacttccctacggcatcgat
ggcatcgtagtaaaagtagattcgatggcacagcagcggcagctggggaacacggttaaa
tcgccgcgctggatgatcgcctataagtttcctgctgaagaagtcgtgaccacgcttgaa
gcgatcgaagttagtgtcggccgtaccggagcagtcacaccgactgcagtgctgacgccg
gttgcagttgccgggacaacggtcaaaagagcctccctgcataacgaagacttgattcag
gagaaggatctgcgtcttggcgaccgcgtcgtcattcgtaaagccggcgacatcattccg
gaggttgtcaatgtattgaccgagcagcggacgggcaaggaaattccctacgcgatgccg
acccactgcccggaatgcggcagtaaacttgtacaccttgaaggcgaggttgcgctccgc
tgtattaatccgaaatgtccggcgctgattcgtgaaggattgattcactttgtctcgcgc
gcggcgatgaacatcgacggccttggcgagaaggtcatccgtcagttatttgagaagaag
ctgatctcggacgttgccgatctgtatcagctgaagcgcgaggacttgctctcgatggag
cggatgggcgagaaatcaaccgataatttactgcaggccattgagcgctcaaaggaaaac
tcgctcgaacatctgctgtttggacttggcatccgtcatatcggtgcaaaagcagcccga
attctggcgcagtcatttaaagacatcgatcacttggctgctgccgatgcggaggcactg
ctttctgtggatgaaattggaacgaaaatggccgactctctcacgacttatttcgctcaa
cctgaagcccaagctctgattggcgaattgaaaagcgctggcgttacgatgacttatctt
ggcccagatcctgaagaagcggcgcaatccgattcaccgtttaatgggaaaaccgttgtc
ttgaccggaaaactgacacagatgacgcgtcaggaagccaaacaagcgattgaagcgcgc
ggcgggaacgtcaccggaagtgtcagcaagagtaccgatttggtcgttgctggagaggcg
gcaggttccaaactgaaaaaagcccaagaacttcagattgaggtttgggatgaagcgcgc
tttgcagaaacgctcaaggaataa
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integrated database retrieval system
