Streptomyces tendae: F3L20_06700
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Entry
F3L20_06700 CDS
T09112
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stee
Streptomyces tendae
Pathway
stee03030
DNA replication
stee03410
Base excision repair
stee03420
Nucleotide excision repair
stee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F3L20_06700 (ligA)
03410 Base excision repair
F3L20_06700 (ligA)
03420 Nucleotide excision repair
F3L20_06700 (ligA)
03430 Mismatch repair
F3L20_06700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stee03032
]
F3L20_06700 (ligA)
03400 DNA repair and recombination proteins [BR:
stee03400
]
F3L20_06700 (ligA)
Enzymes [BR:
stee01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F3L20_06700 (ligA)
DNA replication proteins [BR:
stee03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F3L20_06700 (ligA)
DNA repair and recombination proteins [BR:
stee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F3L20_06700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
F3L20_06700 (ligA)
MMR (mismatch excision repair)
DNA ligase
F3L20_06700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F3L20_06700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QER85611
LinkDB
All DBs
Position
1416703..1418898
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTSVPAQAREQHATLAEQIEEHRFRYYVNDAPVVSDAEFDRLLRELEALEER
YPELRTPESPTQKVAGAYETEFTSVQHRSRMLSLDNTFNDEDLAAWAERIHRELGTQTFH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLKGDKVPDVVE
IRGEVYFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGV
LEGYKGMTRLSQGYGLLKEWGLPTSPHNRVVDGMEGVREFIAYYGENRHSVAHEIDGVVV
KLDEIPLQGRLGTTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPSECP
ECGTPLRPMKEGDVDLRCPNARACPAQLRERLFYLAGRKALDIEHFGYVAAAALTSPLEP
QEPPLKDEGDLFDLTVEQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFANQEGEPKKNA
IAMLANIAAAKERPLARVLTSLSIRHVGPVAAEALAREFRSIERIEQATEEELAGTEGVG
PTIAASLKEWFATDWHREIIRKWKAAGVRMEDERSGEDEGPRPLEGLTVVVTGTLENFTR
DGAKEALQNLGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFNVLLEQGPE
AAAGAALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacgagcgtgcccgcacaagcgcgggagcagcac
gccacgctcgccgagcagatcgaggagcaccgtttccggtactacgtgaacgacgcaccc
gtcgtcagcgacgcggagttcgaccgcctcctgcgtgagctggaggcactggaggagcgg
tacccggagctgcgtacgccggagtcgccgacccagaaggtcgccggggcctacgagacc
gagttcacctccgtccagcaccgctcccgcatgctgtccctggacaacacgttcaacgac
gaggacctggccgcctgggccgagcgcatccacagggaactgggtacgcagacgttccat
ttcctgtgcgaactgaaggtcgacggcctcgcggtgaacctcacctacgagcgcggccgg
ctggtccgcgcggcgacccgcggcgacggccgcaccggcgaggacatcacacccaacgtc
cgcaccatcgccgagatcccggaccgcctcaagggcgacaaggtgcccgacgtcgtggag
atccgcggcgaggtctacttcccgatggagaagttccaggagctcaacgcccggctggtg
gaggccggtgacaagcccttcgccaacccgcgcaacgcggcggccggttcgctgcgccag
aaggacccgcgggtcaccgccacccgcccgctgcacatggtggtgcacggcatcggcgtg
ctcgagggctacaagggcatgacccggctctcccagggctacggcctgctgaaggagtgg
ggactgccgacctccccgcacaaccgggtcgtcgacggcatggagggcgtgcgggagttc
atcgcctactacggcgagaaccgccactccgtggcccacgagatcgacggcgtcgtggtc
aagctcgacgagatcccgctccagggacgcctcggcaccacctcccgcgcgccgcgctgg
gccatcgcgtacaagtacgcgccggaggaggtcaacaccaagctggtcaacatccgggtg
ggtgtcggccgcaccggccgggtcacgccgtacgcgcaggtcgagccggtgacggtggcc
ggctcggaggtcgagttcgccaccctgcacaaccaggacgtggtcaaggccaagggcgtg
ctcatcggcgacacggtcgtgctgcgcaaggccggtgacgtcatccccgagatcctcggg
ccggtggccgacctgcgggacggcagcgagcgcgagttcgtcatgccctccgagtgcccc
gagtgcggtacgccgctgcggccgatgaaggagggcgacgtcgacctgcgctgccccaac
gcccgtgcctgcccggcccagttgcgcgagcggctgttctatctcgccggacgcaaggcg
ctggacatcgagcacttcggctatgtcgccgccgcggccctcaccagcccgctggagccg
caggagccgcccctgaaggacgagggcgacctgttcgacctcaccgtcgagcagctgctg
cccatcaaggcgtacgtcctcgaccaggacagcggtctgcccaagcgggacccgaagacc
ggcgaggagaagatcgccacggtcttcgccaaccaggagggtgagccgaagaagaacgcg
atcgcgatgctcgccaacatcgcggcggccaaggagcgcccgctggcccgcgtgctcacc
agcctgtcgatccgtcacgtcggcccggtggcggcggaggcgctggcccgtgagttccgg
tcgatcgagcgcatcgagcaggccaccgaggaggagctggccggcaccgagggcgtcggc
ccgaccatcgccgcatcgctcaaggaatggttcgccaccgactggcaccgcgagatcatc
cgcaaatggaaggcggccggcgtccgcatggaggacgagcggtccggcgaggacgagggc
ccgcgccccctcgaaggactcaccgtcgtcgtgaccggaacactggagaatttcacccgc
gatggcgcgaaagaggccctgcagaacctgggtgccaaggtgaccggatccgtgtccaag
aagacgtcgttcgtcgtcgtgggtgacaatcccggatcgaaatatgacaaagcgatgcaa
ttgaaggtgccggttctgaacgaggacggtttcaacgtccttctggagcagggccccgag
gccgcggccggtgccgccctttcggccgaggagtaa
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