Sinorhizobium terangae: QA637_10875
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Entry
QA637_10875 CDS
T09097
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
steg
Sinorhizobium terangae
Pathway
steg03030
DNA replication
steg03410
Base excision repair
steg03420
Nucleotide excision repair
steg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
steg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QA637_10875 (ligA)
03410 Base excision repair
QA637_10875 (ligA)
03420 Nucleotide excision repair
QA637_10875 (ligA)
03430 Mismatch repair
QA637_10875 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
steg03032
]
QA637_10875 (ligA)
03400 DNA repair and recombination proteins [BR:
steg03400
]
QA637_10875 (ligA)
Enzymes [BR:
steg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QA637_10875 (ligA)
DNA replication proteins [BR:
steg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QA637_10875 (ligA)
DNA repair and recombination proteins [BR:
steg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QA637_10875 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QA637_10875 (ligA)
MMR (mismatch excision repair)
DNA ligase
QA637_10875 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QA637_10875 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
Nlig-Ia
FdhE_central
DUF4796_N
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
WFU46406
LinkDB
All DBs
Position
complement(2261498..2263651)
Genome browser
AA seq
717 aa
AA seq
DB search
MLSERKPVEQLTETEAAEELAFLAAELARHDALYHGQDAPEISDADYDALKRRNDLIEER
FPALIREDSPSRKVGAAPSLTFQPVVHARPMLSLDNTFSDEDARDFVAGVYRFLGRLPDH
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANVRTIGMIPNSLPADAPDV
VEVRGEIYMAKSDFAALNAEMAAQGRPLYVNPRNTASGSLRQLDAKVTASRKLRFFAYAW
GEMSAMPADTQLGMVETFKAWGFPVNPLIQRFASADELLEHYHHIERERPDLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTRLKGIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIRGVGNRGESIREGRDIRIGDMVIVQRAGDVIPQIVDVVMGERAE
GAEPYKFPTTCPVCGSHAVRDINEKSGKLDAVRRCTGGFVCRAQAVEHLKHFVSRNAFDI
EGLGSKQIEFFFESEDEKLRIRTAPEIFTLERRQEVSLTKLENIEGFGKVSVRKLFEAIN
TRRSIALHRFIYALGIRHVGETTAKLLARSYGSYDHFGAAMVEAGSFAGDAWNELNSIDG
IGEVVARAIVEFYKEPRNVEVVSRLLEEVTPESAEMPVTTGSPVAGKTVVFTGSLEKMTR
DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIGG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgttgagtgaaagaaaacccgtcgagcaattgactgaaacggaagcggccgaagagctc
gcctttctcgcggcggagctcgcccgtcacgacgcgctttatcatgggcaggatgcaccc
gaaatctcggatgccgactacgacgcgctgaagcggcggaacgacctgatcgaggagcgg
ttccccgcgctcatccgcgaggacagcccttcgcgcaaggtcggcgcggctccgtcactc
accttccagccggtcgtccatgcacggccgatgctgtcgctcgacaacacattctcggac
gaagacgctcgcgatttcgtcgccggcgtctatcgcttcctcgggcggcttccggaccat
tcgatcgcctttaccgccgagccgaagatcgacgggctttcgatgtcgctgcgctatgaa
aaccggcggcttgtgacggccgcgacacgcggcgacggcacgaccggcgaaaacgtcacc
gccaatgtccgcacgatcggcatgatccccaatagccttccggccgacgccccagatgtc
gtcgaagtgcgcggcgagatctatatggcgaagtcggacttcgccgcgctcaatgccgaa
atggcggcgcaaggcaggccgctctacgtcaacccgcgcaacaccgcctccggctcgctc
cggcaactcgacgccaaggtgacggcgagccgtaagctccggttcttcgcctatgcctgg
ggcgagatgtcggcgatgccggccgatactcagctcggcatggtcgagacgttcaaggcc
tggggctttccggtcaatccgctgatacagcgtttcgcttctgcggacgaattgctggag
cactatcaccacatcgagcgcgagcggcccgatctcgactacgatatcgacggcgtcgtc
tacaaggtcgaccggctcgacctgcaggcgcgcctcggcttccgctcgcgctcgccgcga
tgggcgacggcgcacaagttcccggccgagcaagccttcacgcggctcaagggcatcgac
atccaggtcggccgcactggcgcgctgacgccagttgcgcggcttgagccgatcaccgtc
ggcggcgtggtggtaaccaacgcgaccttgcacaacgaggactatatccgcggtgtcggc
aatcgcggcgagtcgatccgcgaagggcgcgacatccgcatcggcgacatggtcatcgtg
cagcgggctggggatgtcatccctcaaatcgtcgacgtggtgatgggcgaacgtgcggaa
ggcgccgagccttacaagttcccgaccacatgccctgtctgcggcagccacgcggtgcgc
gacatcaacgagaaatccggcaagctggatgccgtgcgccgctgcaccggcggcttcgtg
tgccgggcgcaggcggtcgagcacctgaagcacttcgtctcgcgcaatgccttcgacatc
gaggggcttggctccaagcagatcgaattcttcttcgaaagcgaggacgagaagctgagg
atccgcaccgcgccggagatcttcacgctggagcgccgccaggaggtctcgctcaccaag
cttgaaaacatcgagggttttggaaaggtcagcgtcagaaagcttttcgaggcgatcaac
acgcgccgctcgatcgcgctccaccgcttcatttacgcgctcggcattcgccacgtgggc
gaaacgaccgcgaagctgctcgcccgctcctatggcagctacgatcactttggcgcggcg
atggtcgaggcgggcagttttgccggcgacgcctggaacgagctcaacagcatcgacggc
atcggcgaggtcgtcgcccgcgccatcgtcgagttctacaaggagccgcgcaacgtcgag
gtcgtttcacggctcctggaagaggtgacgccggaaagcgcggagatgccggttacaacc
ggcagtccggttgcgggcaagacggtggtcttcaccggctcgctcgaaaaaatgacgcgc
gacgaggccaaggcaaaagcggaaagcctcggcgcaaaagtagccggctcggtgtcgaag
aagaccgacatcgtcgtcgcaggaccgggtgccggctcgaagctcgacaaggcgcgcgaa
cttggcgtccagaccatggacgaggacgagtggctggcgctgatcggcgggtag
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integrated database retrieval system
