Stenotrophomonas sp. SBJS02: FQS62_014525
Help
Entry
FQS62_014525 CDS
T10678
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stej Stenotrophomonas sp. SBJS02
Pathway
stej03030
DNA replication
stej03410
Base excision repair
stej03420
Nucleotide excision repair
stej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FQS62_014525 (ligA)
03410 Base excision repair
FQS62_014525 (ligA)
03420 Nucleotide excision repair
FQS62_014525 (ligA)
03430 Mismatch repair
FQS62_014525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stej03032
]
FQS62_014525 (ligA)
03400 DNA repair and recombination proteins [BR:
stej03400
]
FQS62_014525 (ligA)
Enzymes [BR:
stej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FQS62_014525 (ligA)
DNA replication proteins [BR:
stej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FQS62_014525 (ligA)
DNA repair and recombination proteins [BR:
stej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FQS62_014525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FQS62_014525 (ligA)
MMR (mismatch excision repair)
DNA ligase
FQS62_014525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FQS62_014525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WAP04127
LinkDB
All DBs
Position
complement(3121870..3124341)
Genome browser
AA seq
823 aa
AA seq
DB search
MPMSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADS
PTQQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLQFSAEPKMDG
LAISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGRDWPDVLEVRGEVYMAR
ADFEAYNERARLQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDT
HSGTLAQLGAWGFPVSELCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQ
AMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATL
HNADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWRMPTLCPVCGSEIVRE
EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLN
RDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPGWRAQALVQPASF
EWNTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHL
PWPLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDLA
QLLVESEIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDTARGLAAWLDAEGHG
AMLLVAEKAMQQILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSG
SVSKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atcccgatgagccccagccccgccgaacgcgccgaagaccttcgccggcagatcgcccag
gccaaccgcgcctaccacgagctggacgcgccggagatccccgacgtcgactacgaccgg
atggtccgcgagctggaagcactggagcgcgaacacccggaactggcccgtgccgacagc
ccgacccagcaggtcggtgcgcgcccctccggccgcttcccggaggtgcgccacgcggta
ccgatgttgtcgctgtccaatgccttcagcgacgaggaagtggccgatttcgtgcgccgc
atcgatgagcgcctgggccgccgcagcctgcagttttcggccgagccgaagatggacggc
ctggcgatcagcctgcgctatgaggatggtcatttcgtgctcggcgcgacccgtggcgat
ggcagtaccggcgaggacgtgaccgccaacctgcgcgagatcggtgacattcccaagcgt
ctgcacggcagggactggccggatgtgctggaggtgcgcggcgaggtctacatggcccgt
gccgacttcgaggcctacaacgaacgtgcgcgcctgcagggcggcaaggtgctggccaat
ccgcgcaatgcggcggccggttcgctgcgccagctcgacccgaagatcagtgcgcagcgc
aggctgagtttcttcgcctacggcactggcgaagtgcagggcggcgagctgccggacacc
cattcgggcaccctggcccagctcggtgcctggggcttcccggtcagtgagctgtgcaag
gtggtggaaggcaccgacggcctgctgggttactaccgcgatatcggtgagcgccgcgat
ggcctgccgttcgatatcgatggcgtggtctacaagctcgatgaccgcgcgggccagcag
gcgatgggcttcgtctcgcgtgcgccgcgctgggcgatcgcgcacaagttcccggcgcag
gaacagagcaccacggtggaggccatcgagatccagatcggtcgcaccggtgccgccacg
ccggtcgcgcgactggcgccggtggctgtggccggcgtgatcgtgtccaatgccaccctg
cacaacgccgatcagatcgcacgcctggatgtgcgggtgggcgacagcgtgatcgtgcgc
cgcgccggcgatgtgattccggaagtggtcagcgtcatcctcgatcgccgcccgcagggc
accacgccgtggcggatgccgacgctttgcccggtgtgcggctcggaaatcgtgcgcgag
gaaggtgccgccgcatggcgctgttcgggtgagctgtcctgccctgcgcagcgcaaggag
gccattgcccatttcgcttcgcgtcgtgcgatggatatcgacggcctcggcgacaagtac
atcgaaaccctggtcgacgccggcatcgtcaagagtgtggccgacctgtaccggctcaac
cgtgaccagctgctgcacctgaagcttgtgctggatgccgaggacccttccgcactggct
gctgcgctgaagctgcatctgcccgccgaaggcagtggtgcggtgctcaatgcggtgctc
aagctggacggcaacgatccgggctggcgcgcgcaggcgctggtgcagcccgccagcttc
gaatggaacacgaagaagatcgccaccaagtgggccgacaacctgatcgcggcgatcgac
gccagtcgtgccgccacgctggagcgtttgctgttcgcgctcggcatcgagcatgtgggc
gaaagcacggccaaggcgctggcgcagtggttcggtgacctggagctgatccgccacctg
ccgtggccgttgttcaagcgcgtgccggacatcggtggcgaagtagcgcgctcgctcggc
catttcttcgagcagcagggcaaccagcaggccatcgatgacctgctgcaggtcggccag
gtgcgcatcagtgatgtgcatgcgcccagtgccaagctgcgcgaagggctggatctggcg
cagctgctggtcgagtcggaaatccccggcatcacccgcctgcgtgcggagaagctggtg
gctgcgttgcctggcgcgcaggccgtgctcgacgccgagcatggccagttcgtcaacgcc
ggcctgcccgatgacaccgcacgcggtctggctgcgtggctggacgccgaaggccatggc
gcgatgctgctggtggccgaaaaggcgatgcagcagatcctggccaaggcgccggcgctg
gccgagatcgtggccggcccgctggatgggcagaccgtggtgctgaccggcaccctggcc
cagctcacccgcgatgccgccaaggagcgcctggaagcgctgggtgccaaggtctccggc
agcgtttcgaagaagaccagtttcgtggtggccggtaccgaggccggctccaagctggac
aaggcgcaatcgctgggcgtgcccgtgtgggacgaagaccgcctgctggcctaccttgcc
gaacacgaatga
DBGET
integrated database retrieval system
