Stenotrophomonas sp. SBJS02: FQS62_019145
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Entry
FQS62_019145 CDS
T10678
Symbol
smeD
Name
(GenBank) multidrug efflux RND transporter periplasmic adaptor subunit SmeD
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
stej Stenotrophomonas sp. SBJS02
Pathway
stej01501
beta-Lactam resistance
stej01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
stej00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
FQS62_019145 (smeD)
01503 Cationic antimicrobial peptide (CAMP) resistance
FQS62_019145 (smeD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
stej03036
]
FQS62_019145 (smeD)
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
stej02000
]
FQS62_019145 (smeD)
01504 Antimicrobial resistance genes [BR:
stej01504
]
FQS62_019145 (smeD)
Chromosome and associated proteins [BR:
stej03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
FQS62_019145 (smeD)
Transporters [BR:
stej02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
FQS62_019145 (smeD)
Antimicrobial resistance genes [BR:
stej01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
FQS62_019145 (smeD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSH_RND
RND-MFP_C
Beta-barrel_RND
HH_MFP_RND
YknX_C
BSH_CusB
Beta-barrel_RND_2
HH_EMRA
HH_YBHG
CzcB_C
Motif
Other DBs
NCBI-ProteinID:
WAP01400
LinkDB
All DBs
Position
complement(4151448..4152632)
Genome browser
AA seq
394 aa
AA seq
DB search
MLLSRIRPIALSLAIAATVAACGGQPEAPEQGPGDVTVVTLKSETVGLTRELPGRTNAFL
VAEVRPQVNGIVAKRLFTEGGMVKAGEPLYQIEDASYRAQANSARAQLARAEATANAARL
SAKRITELAKVDAVSQQDLENAVAAQKQAEADVGAAKASLDAANVTLGYARITAPISGRI
GKSSVTQGALVSAGQANALATVQQLDPIYVDLTQSSAELLQLRRELAAGRLQDNQTLPVS
ILMEDGSTFEHKGTLEFSEVSVDPATGSFGLRVKVDNPDGLLMPGTYVRAVIGGGVRSDA
VLVPMQGIARDPKGDTTAMVVGKDSKVEVRPVKVSRTVGDKWLVEDGLKAGDKVIVEGLQ
KIGPGMPVKATEKGAAPVKPDAAAQPAAPAGDAK
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgttgctgagccgaatccgacccatcgcgctgtcgctggccatcgccgcgaccgtggct
gcctgtggcggccaacccgaggcccccgaacagggcccgggtgacgtcactgtggtcacg
ctgaagtccgagaccgtgggcctgacccgcgaactgccgggccgcaccaatgccttcctg
gttgccgaagtgcgcccgcaggtcaatggcatcgtcgccaagcgcctgttcaccgaaggc
ggcatggtcaaggccggcgagccgctgtaccagatcgaggacgccagctaccgtgcccag
gccaacagcgctcgcgcgcagttggcccgcgccgaagccacggccaacgccgcccgcctg
agtgcaaagcgcatcaccgaactggccaaggtcgacgcggtcagccagcaggacctggaa
aacgccgtcgccgcgcagaagcaggccgaggccgacgtcggtgccgccaaggcctcgctg
gatgcggccaacgtcaccctgggctacgcccgcatcaccgcgccgatcagcggccgcatc
ggcaagtccagcgttacccagggtgcgctggtcagcgccggccaggccaatgcactggcc
accgtgcagcagctggacccgatctacgtcgacctgacccagtcctcggccgagctgctg
cagctgcgccgtgagctggccgctggccgcctgcaggataaccagacgctgccggtcagc
atcctgatggaagacggcagcaccttcgagcacaagggcacgctggagttctccgaagtc
agcgtcgatccggccaccggcagcttcggcctgcgcgtgaaggtggacaacccggatggc
ctgctgatgccgggcacctacgtgcgcgcggtgatcggcggcggcgtgcgcagcgatgca
gtgctggtgccgatgcagggcatcgcccgcgatccgaagggcgacaccaccgcgatggtg
gtcggcaaggacagcaaggttgaagtgcgcccggtcaaggtcagccgcacggttggcgac
aagtggctggtcgaggacggtctgaaggccggcgacaaggtcatcgtcgaaggcctgcag
aagatcggccccggcatgccggtcaaggccaccgagaagggcgctgctccggtcaagccg
gacgccgccgcccagcctgccgccccggccggcgacgcgaagtaa
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