Allostella sp. ATCC 35155: STAQ_05600
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Entry
STAQ_05600 CDS
T07954
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stel
Allostella sp. ATCC 35155
Pathway
stel03030
DNA replication
stel03410
Base excision repair
stel03420
Nucleotide excision repair
stel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
STAQ_05600 (ligA)
03410 Base excision repair
STAQ_05600 (ligA)
03420 Nucleotide excision repair
STAQ_05600 (ligA)
03430 Mismatch repair
STAQ_05600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stel03032
]
STAQ_05600 (ligA)
03400 DNA repair and recombination proteins [BR:
stel03400
]
STAQ_05600 (ligA)
Enzymes [BR:
stel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
STAQ_05600 (ligA)
DNA replication proteins [BR:
stel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
STAQ_05600 (ligA)
DNA repair and recombination proteins [BR:
stel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
STAQ_05600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
STAQ_05600 (ligA)
MMR (mismatch excision repair)
DNA ligase
STAQ_05600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
STAQ_05600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Peripla_BP_4
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
BBK35482
LinkDB
All DBs
Position
complement(601494..603608)
Genome browser
AA seq
704 aa
AA seq
DB search
MTNDDATRRRAVEDLTIEEAAAELERLAGEIAYHDQRYHQEDAPEISDAAYDALQRRNKA
IEARFPDLVREDSPSRRVGAAPGQGFGKVRHARPMLSLENAFSDEDVIAFFTSIRQFLRK
DEPFKSDPDAPIAVVAEPKIDGLSATLRYEDGRFVLGATRGDGEVGEDVTANLRTLKDVP
HRLAGDAPAVLEVRGEVYMTRDDFLALNAARQAAGEPVFANPRNSAAGSLRQLDPAVTAS
RPLRFFAYAWGETSARIADSHWGVLERMRAWGFQVNPETHRCAAIEEALERHRDLGRRRA
ELGYDIDGVVYKVDSLAFQERLGFVTRAPRWAIAHKFPAEQAETTLRGITIQVGRTGALT
PVAELEPVTVGGVVVSRATLHNEDEIQRKDVRVGDRVVLQRAGDVIPQIVSVILDRRPEG
TQPFAFPTVCPACGSHAVREPGEVARRCTGGLICPAQAVERLRHFVSRDAFDIEGLGEKH
IAAFWADGIVRSPADIFRLAEEPAPLVGREGWKETSIANLQRAVRARRTIGLDRFIYALG
IRQIGEATARLLARNYETLEAFRAAMVAAADETGEAFHDLDSITGIGTSMARDLVQFFAE
PHNLEVIDDLLAAGVRVTAVEAPQRVASPIAGKTVVITGELERMTRREAKARAEALGAKV
AESVSKKTDFVVVGASPGSKATKARELGIRILDEAEWLALAGEN
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacgacgacgcgacccggcgccgggcggtcgaggatctgacgatcgaggaagcc
gcggccgaactggaacggctggcgggcgagatcgcctatcacgaccagcgctaccaccag
gaggacgcaccggagatcagcgacgccgcctatgacgccctgcaacggcgcaacaaggcg
atcgaggcgcgctttcccgacctcgtccgcgaagacagcccgagccggcgggtcggcgcc
gcgccgggccagggcttcggcaaggtgcgccatgcgcggccgatgctgtcgctggagaat
gccttctccgacgaggacgtcatcgccttcttcacctcgatccggcagttcctgcgcaag
gacgagcccttcaagtccgatcccgatgcgccgatcgcggtggtggccgagcccaagatc
gacgggctgtcggcgaccctgcgctacgaggacgggcgcttcgtgctcggcgccacccgc
ggcgacggcgaggtcggcgaggacgtgacggccaacctgcgcaccctgaaggacgtgccg
catcgcctggcgggcgacgcgccggcggtgctggaggtccggggcgaggtctacatgacg
cgcgacgacttcctcgccctcaacgcggcgcgccaggcggcgggcgagccggtcttcgcc
aatccgcgcaacagcgccgccggctcgctgcggcagctcgaccccgcggtgaccgccagc
cggccgctgcgcttcttcgcctatgcctggggcgagaccagcgcgcgcatcgccgacagc
cactggggcgtgctggagcggatgcgcgcctggggcttccaggtcaacccggagacgcac
cgctgcgccgcgatcgaggaggcgctggagcggcaccgcgacctcggccggcgccgcgcc
gagctcggctacgacatcgacggcgtcgtctacaaggtcgacagcctcgccttccaggag
cggctgggattcgtcacgcgcgccccgcgctgggcgatcgcccacaagttcccggccgaa
caggcggagacgacgctgcgcggcatcaccatccaggtcggccgcaccggcgccctcacc
cccgtcgccgaactggagccggtgacggtcggcggcgtcgtcgtctcccgcgcgaccctg
cacaacgaggacgagatccagcgcaaggacgtgcgggtcggcgaccgcgtcgtgctgcag
cgcgccggcgacgtcatcccgcagatcgtgtcggtgatcctggaccgccggccggagggc
acccaacccttcgccttcccgaccgtctgcccggcctgcggcagccacgccgtgcgcgag
ccgggcgaggtcgcacggcgctgcaccggcggcctgatctgccccgcccaggcggtcgag
cgcctgcgccacttcgtctcgcgcgatgccttcgacatcgagggtctgggcgagaagcac
atcgcggccttctgggccgacggcatcgtccgcagcccggccgacatcttccggctggcc
gaggagcccgcaccgctggtcgggcgcgagggctggaaggagacttcgatcgccaacctg
cagcgcgccgtccgcgcccgccgcacgatcgggctcgaccgcttcatctatgccctcggc
atccgccagatcggcgaggccacggcccggctgctggcgcgcaactacgagacgctggag
gccttccgcgccgccatggtcgcggccgcggacgaaacgggcgaggccttccacgatctc
gattcgatcaccggcatcggcaccagcatggcccgcgacctcgtccagttcttcgccgag
ccgcacaacctcgaggtcatcgacgacctcctggcggccggcgtgcgggtgaccgcggtc
gaggcgccgcagcgcgtcgcctcgccgatcgccggcaagaccgtcgtcatcaccggcgaa
ctggagcggatgacccggcgggaggccaaggcgcgggcggaggccctgggcgccaaggtc
gcggaatccgtgtccaagaagaccgacttcgtcgtcgtcggcgccagccccggctcgaag
gcgaccaaggcgcgcgaactcggcatccgcatcctcgacgaggcggaatggctggcgctg
gccggcgagaactga
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integrated database retrieval system
