Stenotrophomonas sp. WZN-1: CCR98_13410
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Entry
CCR98_13410 CDS
T04963
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sten
Stenotrophomonas sp. WZN-1
Pathway
sten03030
DNA replication
sten03410
Base excision repair
sten03420
Nucleotide excision repair
sten03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sten00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CCR98_13410
03410 Base excision repair
CCR98_13410
03420 Nucleotide excision repair
CCR98_13410
03430 Mismatch repair
CCR98_13410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sten03032
]
CCR98_13410
03400 DNA repair and recombination proteins [BR:
sten03400
]
CCR98_13410
Enzymes [BR:
sten01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CCR98_13410
DNA replication proteins [BR:
sten03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CCR98_13410
DNA repair and recombination proteins [BR:
sten03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CCR98_13410
NER (nucleotide excision repair)
GGR (global genome repair) factors
CCR98_13410
MMR (mismatch excision repair)
DNA ligase
CCR98_13410
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CCR98_13410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ARZ75125
LinkDB
All DBs
Position
complement(2826229..2828694)
Genome browser
AA seq
821 aa
AA seq
DB search
MSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADSPT
QQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLRFSAEPKMDGLA
ISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDVPKRLHGKDWPDVLEVRGEVYMARAD
FEAYNERARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHS
GTLAQLGAWGFPVSELCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRIGQQAM
GFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHN
ADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSEIVREEG
AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVRSVADLYRLNRD
QLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGNDPAWRAQALAQPASFEW
NTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPW
PLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDLAQL
LVESEIPGITRLRAEKLAAALPGAQAVLDAEHGQFVNAGLPDDTARGLADWLDADGHGAM
LLAAEEAMQQILTRAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSV
SKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagccccagccccgccgaacgcgccgaagaccttcgccggcagatcgcccaggccaac
cgcgcctaccacgagctggacgcgccggagatccccgacgtcgactacgaccggatggtg
cgcgagctggaagcgctggagcgcgagcacccggaactggcccgtgccgacagcccgacc
cagcaggtcggtgcgcgcccgtccggccgcttccccgaagtgcgccatgcggtgccgatg
ctgtcgctgtccaatgccttcagcgatgaggaagtggccgacttcgtgcgccgcatcgat
gagcgcctgggccgtcgcagcctgcggttctcggccgaaccgaagatggatggcctggcg
atcagcctgcgctacgaggacggtcatttcgtactcggcgcaacccgcggtgatggcagt
accggcgaggacgtgaccgccaacctgcgtgagatcggcgacgttcccaagcgcctgcac
ggcaaggactggccggacgtactggaggtgcgtggcgaggtctacatggcgcgcgccgac
ttcgaggcctacaacgaacgcgcgcgccagcagggcggcaaggtgctggccaacccacgc
aacgcggcagccggttcactgcgccagcttgatccgaagatcagtgcgcagcgcaggctg
agtttcttcgcctacggcaccggcgaagtgcagggcggcgagttgccggacacccattcg
ggcacgctggcccagctcggtgcctggggctttccggtcagcgagttgtgcaaggtggtg
gaaggcaccgacggcctgctcggctactaccgtgacatcggcgagcgtcgcgatggcctg
ccgttcgacatcgatggcgtggtctacaagctggatgaccgtatcggccagcaggcgatg
ggcttcgtttcgcgcgcgccgcgctgggccatcgcgcacaagttccctgcacaggaacag
agcaccacggtggaagcgatcgagatccagatcggccgcaccggtgccgccacgccggtc
gcacggctggcgccggtggcggtggccggcgtgatcgtatccaacgccacgttgcacaac
gccgatcagatcgcgcgcctggatgtgcgcgtgggtgacagcgtgatcgtgcgacgcgct
ggcgacgtgattccagaagtggtcagcgtcatcctcgaccgccgcccgcagggcaccacg
ccctggcagatgccgacgcgctgcccggtgtgcggctcggaaatcgtgcgcgaggaagga
gcagctgcgtggcgctgttcgggcgaactgtcctgcccggcgcagcgcaaggaggccatt
gcccatttcgcttcgcgtcgtgcgatggatatcgacggcctcggcgacaagtacatcgaa
accctggtcgacgccggcatcgtcaggagcgtggccgatctgtaccggctcaaccgcgac
cagctgctgcacctgaagctggtgctggacgccgaggatccgtcggcactggccgccgcg
ctgaagctgcacctgccggccgaaggcagcggcgcggtgctcaatgcggtgctcaagctg
gatggcaacgatccggcgtggcgcgcgcaggcgctggcgcagccggccagcttcgaatgg
aatacgaagaagatcgccaccaagtgggccgacaacctgatcgcggcaatcgacgccagc
cgtgcggccacgctggagcgcctgctgttcgcgcttggcatcgagcacgtcggcgagagc
acggccaaggcgctggcgcagtggttcggtgacctggagctgatccgccacctgccatgg
ccgttgttcaagcgcgtgccggacatcgggggcgaagtggcgcgttctctcggccatttc
ttcgagcagcagggcaaccagcaggccatcgatgacctgctgcaggtcgggcaggtgcgc
atcagcgatgtgcacgcgcccagcgccaagctgcgcgaaggcctggatctggcgcaactg
ctggttgaatcggaaattcccggcatcacccgcctgcgtgcggagaagctggcggctgcg
ttgccgggcgctcaggcggtgctggatgccgagcatggccagttcgtcaacgccggcctg
ccggacgacaccgcgcgtggattggccgactggctcgatgccgatggccatggtgcgatg
ctgctggcggctgaggaggcgatgcagcagatcctgaccagggcgccggcgctggccgag
atcgtggccggcccgctggatgggcagaccgtggtgctgaccggcaccctggcccagctc
acccgcgatgccgccaaggaacgcctggaagcgctgggtgccaaggtctccggcagcgtg
tcgaagaagaccagcttcgtggtggccggtaccgaggctggctccaagctggacaaagca
caatcgctgggcgtgccggtatgggacgaagaccgcctgctggcctacctcgccgaacac
gaatga
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