Stenotrophomonas sp. Pemsol: PEM_05085
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Entry
PEM_05085 CDS
T10809
Symbol
nth
Name
(GenBank) endonuclease III
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PEM_05085 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_05085 (nth)
Enzymes [BR:
steo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PEM_05085 (nth)
DNA repair and recombination proteins [BR:
steo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PEM_05085 (nth)
Prokaryotic type
PEM_05085 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
EndIII_4Fe-2S
RecR_HhH
HHH_5
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AYA90157
LinkDB
All DBs
Position
complement(1119074..1119763)
Genome browser
AA seq
229 aa
AA seq
DB search
MATTKKTARAPARRGGTMPRADVVEMFTRLRELNPHPKTELEYSSPFELLVAVALSAQAT
DVGVNKATRRLFPVANTPAKILALGEDGLKQYIATIGLFNAKAKNVIATCAILLEKHGGE
VPRDREALEALPGVGRKTANVVLNTAFGEPVMAVDTHIFRVANRTGLAPGRNVREVEDKL
VKVIPAEFLLNAHHWLILHGRYVCKARKPDCPGCVIADLCRFKEKTTAE
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
atggccaccacgaaaaagaccgcacgcgccccggcgcggcgtggcggcacgatgccacgc
gccgacgtggtggagatgttcacccgcctgcgcgaactcaacccgcacccgaagaccgaa
ctggagtacagctcgccgttcgagctgctggtggcggtggcgttgtcggcgcaggccacc
gacgtcggcgtcaacaaggccacgcgccgcctgttcccggtcgccaacacgccggcgaag
atccttgcgctcggcgaggatggcttgaagcagtacatcgccaccatcgggctgttcaac
gccaaggcaaagaacgtgatcgccacctgcgcgatcctgctggagaagcatggcggtgaa
gtgccgcgtgatcgcgaagcgctggaagcgctgccgggcgtcgggcgcaagaccgccaac
gtggtgctcaacaccgcgttcggcgagccggtgatggcggtggacacgcatatcttccgc
gtcgccaaccgcacaggactggcgccgggcaggaacgtgcgcgaagtggaagacaagctg
gtgaaggtgatcccggccgagttcctgctcaacgcgcatcactggctgatcctgcacgga
cgttatgtgtgcaaggcgcgcaagccggattgcccgggctgcgtgatcgccgacctgtgc
cggttcaaggaaaagaccacggccgagtga
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