Stenotrophomonas sp. Pemsol: PEM_10925
Help
Entry
PEM_10925 CDS
T10809
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
steo Stenotrophomonas sp. Pemsol
Pathway
steo03030
DNA replication
steo03410
Base excision repair
steo03420
Nucleotide excision repair
steo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
steo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PEM_10925
03410 Base excision repair
PEM_10925
03420 Nucleotide excision repair
PEM_10925
03430 Mismatch repair
PEM_10925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
steo03032
]
PEM_10925
03400 DNA repair and recombination proteins [BR:
steo03400
]
PEM_10925
Enzymes [BR:
steo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PEM_10925
DNA replication proteins [BR:
steo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PEM_10925
DNA repair and recombination proteins [BR:
steo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PEM_10925
NER (nucleotide excision repair)
GGR (global genome repair) factors
PEM_10925
MMR (mismatch excision repair)
DNA ligase
PEM_10925
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PEM_10925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AYA91226
LinkDB
All DBs
Position
complement(2330543..2333008)
Genome browser
AA seq
821 aa
AA seq
DB search
MSSSPAERAEDLRRQIAQANRAYHELDAPQIPDIDYDRMVRELEALEREYPELARADSPT
QQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLQFSAEPKMDGLA
ISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDVPKRLHGKDWPDVLEVRGEVYMARAD
FEAYNERARMHGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDTHS
GTLAQLGAWGFPVSALCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQAM
GFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATLHN
ADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPQDTSPWQMPTRCPVCGSEIVREEG
AAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLSRD
QLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLRLDGNDPGWRAQALAQPARFEW
NTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHLPW
PLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSARLREGLDLAQL
LVESEIPGITRLRAERLVAALPGAQAVLDAEHGQFVNAGLPDDTARGLAQWLDSEGHGGM
LLAAEKAMQQILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSGSV
SKKTSFVVAGSEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagctccagccccgccgaacgcgccgaagatctccgccggcagatcgcccaggccaac
cgcgcctaccatgagctggacgccccgcagatccccgacatcgactacgaccggatggtg
cgcgagctggaagcactggagcgcgaatatccggaactggcccgggccgacagtccgacc
cagcaggtcggcgcgcgtccctccggccgtttccccgaagtccgccatgcggtgccgatg
ttgtcgctgtccaacgccttcagcgatgaggaagtggcggattttgtgcgccgcatcgat
gaacgactgggccgccgcagcctgcagttttcggccgagccgaagatggacggcctggcg
atcagcctgcgctatgaggatggtcatttcgtgctcggcgcgacccgcggcgatggcagt
accggcgaggacgtgaccgccaacctgcgcgagatcggcgatgttcccaagcgcctgcac
ggcaaggattggccggatgtgctggaggtgcgcggcgaggtctacatggcgcgtgccgat
ttcgaggcatacaacgaacgtgcgcgcatgcacggcggcaaggtgctggccaacccgcgc
aatgcggcggccggatcgctgcgccagctcgacccgaagatcagtgcgcagcgcaggttg
agcttctttgcctacggtaccggtgaagtgcagggcggcgagctgcccgatacccattcg
ggcacgctggcgcagctcggcgcctggggtttcccggtcagcgcgctgtgcaaggtggtg
gaaggcaccgacggcctgctcggctactaccgcgatatcggcgagcgccgcgacggcctg
ccgttcgatatcgatggcgtcgtctacaagctcgatgaccgtgccggccagcaggcgatg
ggctttgtctcgcgtgcgccgcgctgggccatcgcgcacaagttcccggcacaggaacag
agcaccacggtggaggcgatcgagatccagatcggccgcaccggtgcggccacaccggtc
gcgcggctggcaccggtggccgtggccggcgtgatcgtgtccaacgccacgctgcacaac
gccgaccagatcgcacgtctcgatgtgcgtgtcggtgacagcgtgatcgtgcgccgtgcc
ggcgacgtgatcccggaagtggtcagcgtcatcctcgaccgacgcccgcaggacacctcg
ccctggcagatgccgacgcgctgcccggtgtgcggctcggagatcgtgcgcgaggaaggg
gcggccgcatggcgctgctcgggcgagctgtcctgcccggcgcagcgcaaggaagccatt
gcccatttcgcttcgcgccgcgcgatggacatcgacggcctgggcgacaagtacattgaa
accctggtcgacgctggcatcgtcaagagcgtggccgacctgtaccggctcagtcgtgac
cagctgctgcacctgaagctggtgctggacgctgaagatccctcggcgctggccgccgca
ctgaagctgcacctgccggctgaaggcagtggcgcggtgctcaatgcggtgctcaggctg
gacggcaacgatccgggctggcgcgcgcaggcgctggcgcagccggcccgcttcgaatgg
aacacgaagaagatcgcgaccaagtgggccgacaacctgatcgcggccatcgacgccagt
cgtgccgccacgctggaacggctgctgttcgcgctgggcatcgagcacgtgggcgaaagc
acggccaaggcgctggcgcagtggttcggtgacctggaactgatccgccacctgccgtgg
ccattgttcaagcgtgtgccggacatcggtggcgaagtggcgcggtcgctcggccacttc
ttcgagcagcagggcaaccagcaggccatcgatgacctgctgcaggtcggccaggtccgc
atcagcgatgtgcacgcgcccagcgccaggctgcgcgaggggctggacctggcgcagctg
ttggtcgaatcagagattcccggcatcacccgcctgcgcgcggagagactggtggctgcg
ttgcccggtgcccaggcggtgctcgacgccgagcatgggcagttcgtcaacgcaggattg
ccggacgacaccgcgcgtggcctggcccagtggctggacagcgagggccacggcgggatg
ctgctggcggccgagaaggcgatgcagcagatcctggccaaggcaccggcgctggccgag
atcgtggccggcccgctggatgggcagaccgtggtgctgaccggcaccctggcccagctc
acccgcgatgccgccaaggagcgcctggaggccctcggtgcaaaggtctccggcagcgtt
tcgaagaagaccagcttcgtggtcgccggtagcgaagcgggttccaagctggacaaggcg
cagtcgctgggcgtgccggtgtgggacgaagaccgcctgctggcctatctggccgaacac
gagtga
DBGET
integrated database retrieval system
