Stenotrophomonas sp. P2112: ACEPA4_12755
Help
Entry
ACEPA4_12755 CDS
T10817
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stez Stenotrophomonas sp. P2112
Pathway
stez03030
DNA replication
stez03410
Base excision repair
stez03420
Nucleotide excision repair
stez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACEPA4_12755 (ligA)
03410 Base excision repair
ACEPA4_12755 (ligA)
03420 Nucleotide excision repair
ACEPA4_12755 (ligA)
03430 Mismatch repair
ACEPA4_12755 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stez03032
]
ACEPA4_12755 (ligA)
03400 DNA repair and recombination proteins [BR:
stez03400
]
ACEPA4_12755 (ligA)
Enzymes [BR:
stez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACEPA4_12755 (ligA)
DNA replication proteins [BR:
stez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACEPA4_12755 (ligA)
DNA repair and recombination proteins [BR:
stez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACEPA4_12755 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACEPA4_12755 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACEPA4_12755 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACEPA4_12755 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
XGK37705
LinkDB
All DBs
Position
complement(2736109..2738580)
Genome browser
AA seq
823 aa
AA seq
DB search
MPMSSSPAERAEDLRRQIAQANRAYHELDSPEIPDIDYDRMVRELEALEREHPELARADS
PTQQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLQFSAEPKMDG
LAISLRYEDGHFVLGATRGDGSTGEDVTANLREIGDVPKRLHGKDWPDVLEVRGEVYMAR
ADFEAYNERARLHGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDT
HSGTLAQLGAWGFPVSALCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQ
AMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATL
HNADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPQGTTPWQMPTRCPVCGSEIVRE
EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLS
RDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLRLDGNDPGWRAQALAQPARF
EWNTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHL
PWPLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSARLREGLDLA
QLLVESEIPGITRLRAERLVAALPGAQAVLDAEHGQFVNAGLPDDTARGLAQWLDSEGHG
AMLLAAEKAMQQILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEGLGAKVSG
SVSKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
attccgatgagctccagccccgccgaacgcgccgaagatctccgccggcagatcgcccag
gccaaccgcgcctaccatgagctggactccccggagatccccgacatcgactacgaccgg
atggtgcgcgagctggaagcactggagcgcgaacatccggaactggcccgggccgacagt
ccgacccagcaggtcggcgcgcgtccctccggccgtttccccgaagtccgccatgcggtg
ccgatgttgtcgctgtccaacgccttcagcgatgaggaagtggcggatttcgtgcgccgc
atcgatgaacgcctgggccgccgcagcctgcagttttcggccgagccgaagatggacggc
ctggcgatcagcctgcgctatgaggatggtcatttcgtgctcggcgcgacccgcggcgat
ggcagcaccggcgaggacgtgaccgccaacctgcgcgagatcggcgatgttcccaagcgg
ctgcacggcaaggactggccggacgtgctggaggtgcgcggcgaagtctacatggcgcgc
gccgatttcgaggcgtacaacgaacgtgcgcgcctgcacggcggcaaggtgctggccaac
ccgcgcaatgcggcggccgggtcgctgcgccagctcgacccgaagatcagtgcgcagcgc
aggttgagcttctttgcctacggtaccggtgaagtgcagggcggcgagctgcccgatacc
cattcgggcacgctggcgcagctcggcgcctggggtttcccggtcagcgcgctgtgcaag
gtggtggaaggcaccgacggcctgctcggctactaccgcgatatcggcgagcgccgcgac
ggcctgccgttcgatatcgatggcgtcgtctacaagctcgatgaccgtgccggccagcag
gcgatgggctttgtctcgcgtgcgccgcgctgggccatcgcgcacaagttcccggcacag
gaacagagcaccacggtggaggcgatcgagatccagatcggccgcaccggtgcggccaca
ccggtcgcgcggctggcaccggtggccgtggccggcgtgatcgtgtccaacgccacgctg
cacaacgccgaccagatcgcacgcctcgacgtgcgcgtcggcgacagcgtgatcgtgcgc
cgtgccggcgacgtgatcccggaagtggtcagcgtcatcctcgatcgccgcccgcagggc
accacgccctggcagatgccgacgcgctgcccggtgtgcggctcggagatcgtgcgcgag
gaaggggcggccgcatggcgctgctcgggcgagctgtcctgcccggcgcagcgcaaggaa
gccattgcccatttcgcttcgcgccgcgcgatggacatcgacggcctgggcgacaagtac
attgaaaccctggtcgacgctggcatcgtcaagagcgtggccgacctgtaccggctcagt
cgcgaccagctgctgcacctgaagctggtgctggacgctgaagatccctcggcgctggcc
gccgcactgaagctgcacctgccggctgaaggcagtggcgcggtgctcaatgcggtgctc
aggctggacggcaacgatccgggctggcgcgcgcaggcgctggcgcagccggcccgcttc
gaatggaacacgaagaagatcgcgaccaagtgggccgacaacctgatcgcggccatcgac
gccagtcgtgccgccacgctggaacggctgctgttcgcgctgggcatcgagcacgtgggc
gaaagcacggccaaggcgctggcgcagtggttcggtgacctggaactgatccgccacctg
ccgtggccattgttcaagcgcgtgccggacatcggtggcgaagtggcgcggtcgctcggc
cacttcttcgaacagcagggcaaccagcaggccatcgatgacctgctgcaggtcggccag
gtccgcatcagcgatgtgcacgcgcccagcgccaggctgcgcgaggggctggacctggcg
cagctgttggtcgaatcagagattcccggcatcacccgcctgcgcgcggagagactggtg
gccgcgttgcccggtgcccaggcggtgctcgacgccgagcatgggcagttcgtcaacgca
ggattgccggacgacaccgcgcgtggcctggcccagtggctggacagcgagggccatggc
gcgatgctgctggcagccgagaaggcgatgcagcagatcctggccaaggcaccggcgctg
gccgagatcgtggccggcccgctggatgggcagaccgtggtgctgaccggcaccctggcc
cagctcacccgcgatgccgccaaggagcgcctggagggcctcggtgcaaaggtctccggc
agcgtctcgaagaagaccagcttcgtggtcgccggtaccgaagcgggttccaagctggac
aaggcgcagtcgctgggcgtgccggtgtgggacgaagaccgcctgctggcctatctggcc
gaacacgagtga
DBGET
integrated database retrieval system
