Streptomyces sp. Go40/10: KBP30_13480
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Entry
KBP30_13480 CDS
T11184
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
stgo Streptomyces sp. Go40/10
Pathway
stgo03030
DNA replication
stgo03410
Base excision repair
stgo03420
Nucleotide excision repair
stgo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
stgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KBP30_13480 (ligA)
03410 Base excision repair
KBP30_13480 (ligA)
03420 Nucleotide excision repair
KBP30_13480 (ligA)
03430 Mismatch repair
KBP30_13480 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
stgo03032
]
KBP30_13480 (ligA)
03400 DNA repair and recombination proteins [BR:
stgo03400
]
KBP30_13480 (ligA)
Enzymes [BR:
stgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KBP30_13480 (ligA)
DNA replication proteins [BR:
stgo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KBP30_13480 (ligA)
DNA repair and recombination proteins [BR:
stgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KBP30_13480 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KBP30_13480 (ligA)
MMR (mismatch excision repair)
DNA ligase
KBP30_13480 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KBP30_13480 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
MutL
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
UFR02134
LinkDB
All DBs
Position
complement(3261138..3263333)
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQQAETAVPAEARDKHAQLAEQIEEHRFRYYVKDAPVISDAEFDQLLKSLEALEER
YPELRTPDSPTQKVAGSYETEFTAVEHRQRMLSLDNTFNDDELAAWADRIARELGDQTYH
FLCELKVDGLAVNLTYEKGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLAGDKVPDLVE
IRGEVYFPMEKFLELNERLVATGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFTGLTRLSQAYDLLKTWGLPTSPHNRVVDDLDGVREFIAHYGENRHSVEHEIDGVVV
KLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEREFVMPSECP
ECGTALRPMKEGDIDLRCPNARTCPAQLRERVSYLAGRECLDIEHFGAVAAAALTRPLEP
AEPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKHDPKTGEEKVVTVFANQKGEPKKNT
LALLANIEAAKSRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATEEELASTDGVG
PIIAAALKEWFAEDWHREIVRKWKAAGVPLEDESSGEDEGPRPLEGLTVVVTGTLENFTR
DGAKEALQGQGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFNVLLEQGPE
AAAEVALPTGE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcagcaggcggagacggcagtgcccgccgaggcacgtgacaagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcatcagcgacgcggagttcgaccagctcctgaagtccctggaggccctggaggagcgg
tatccggagctgcgcaccccggactcgcccacccagaaggtcgcggggtcgtacgagacg
gagttcaccgcggtcgagcaccgccagcggatgctctccctggacaacacgttcaacgac
gacgagctggccgcctgggcggaccgcatcgcccgggaactcggcgaccagacgtaccac
ttcctgtgcgagctgaaggtggacggcctcgccgtcaacctcacctacgaaaagggccgc
ctcacgcgcgcggcgacccgcggtgacggccgcaccggcgaggacatcacgccgaacgta
cggacgatcgcggagatcccggaccgcctggcgggcgacaaggtgcccgacctggtggag
atccgcggcgaggtgtacttcccgatggagaagttcctcgaactcaacgaacgcctggtc
gccaccggtgacaagccgttcgccaacccccgcaacgccgcggccggttcgctgcgccag
aaggacccgcgggtcaccgccacccgtccgctgcacatggtcgtccacggcatcggcgcc
ctggagggcttcacgggcctgacccggctctcccaggcctacgacctgctcaagacctgg
ggcctgcccacctcgccgcacaaccgcgtggtcgacgacctcgacggcgtacgggagttc
atcgcccactacggcgagaaccgccactccgtcgagcacgagatcgacggagtcgtggtc
aagctggacgagatccgcctccaggggcggctcggctccaccgcgcgggccccccgctgg
gccatcgcgtacaagtacgcgccggaggaggtcaacaccaagctggtcgacatcaaggtg
ggcgtcggccgcaccggccgtgtcacgccgtacgcgcaggtcgagccggtcacggtcgcg
ggcagcgaggtggagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtc
ctcatcggcgacaccgtggtgctgcgcaaggccggtgacgtgatcccggagatcctcggc
ccggtggtcgacctgcgggacggcaccgagcgggagttcgtgatgccgagcgagtgcccc
gagtgcgggacggcgctcaggcccatgaaggagggcgacatcgacctccgctgccccaac
gcccgtacctgcccggcccagttgcgggagcgggtctcctacctcgccggccgtgagtgc
ctggacatcgagcacttcggcgcggtggccgccgccgcgctcacccgcccgctggagccg
gccgagccgccgctggtggacgagggcgacctgttcgacctgacggtggagaagctgctg
cccatcaaggcctacgtcctcgacccggacagcggcctgcccaagcacgacccgaagacc
ggcgaggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaacacc
ctcgccctgctggcgaacatcgaggccgccaagtcccgccctctcgcccgcttcctgaac
gggctgtcgatccggcacgtgggaccggtcgcggcgcaggccctcgcgcgcgagttccgg
tccatcgaccgcatcgaacaggcgaccgaggaggagctggcttccaccgacggcgtcggc
ccgatcatcgccgccgcgctcaaggagtggttcgccgaggactggcaccgcgagatcgtc
cgcaagtggaaggccgcgggcgtcccgctggaggacgagtcgtccggcgaggacgagggg
ccgcgtccgctggaggggctcacggtcgtcgtcaccgggaccctggagaacttcacccgg
gacggggccaaggaggcgctgcagggccagggcgcgaaggtgaccggttcggtgtcgaag
aagacctcgttcgtcgtagtgggtgacaaccccggatcgaagtacgacaaggcgatgcaa
ctgaaggttcccgttctgaacgaggacggtttcaacgtccttctggaacagggccccgaa
gccgcggccgaagtcgcgcttccgaccggggagtag
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